AMBER: Does amber use water density around 1 at room temperature

From: Li Su <>
Date: Tue, 23 Jan 2007 17:07:20 -0500

 Sorry to bother. I am just wondering whether amber is using water which has
density around 1 g/mm^3 when using leap to solvate by the command
solvatebox. Because I was trying to construct a box of pure water by
solvatebox of an empty unit. When setting boxside to be 34 or so, I get 853
water in it, which makes the density less than 0.7. Is it normal? If so.
Then, is tryint to contral the pressure will be the way for me to get the
density to be around 1? Thank you very much in advance!



The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to
Received on Wed Jan 24 2007 - 06:07:44 PST
Custom Search