Hi,
Is there any method in amber which can calculate RMSD of atoms/residues
just from any pdb file,
I mean to say , I want to plot RMSD Vs atoms/residues from crystallographic
structure and to compare it with the rmsd plot got from the simulation. It
will be a good comparision if we plot both of them in one place.
Regards
Santanu
On 1/29/07, Gustavo Seabra <gustavo.seabra.gmail.com> wrote:
>
> On 1/29/07, santanu roy <66.santanu.gmail.com> wrote:
> >
> > Sir ,
> > I am done with my qm/mm simulation , and have got expected
> result.
>
> Glad to hear that!
>
>
> > Anyway , I have some basic questions regarding AMBER tutorial one ,
> > simulation of DNA in solvated form.
> > [...]
>
> I'd suggest that you open a new thread with this one, since it's a
> different topic altogether.
>
> Good luck,
>
> Gustavo.
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber.scripps.edu
> To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
>
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Wed Jan 31 2007 - 06:07:34 PST
