AMBER: question about the testing of AMBER9

From: <>
Date: Fri, 05 Jan 2007 20:25:16 -0600

Dear Sir or Madam,

I "make serial" as instructed in 'readme.txt' in the CD of AMBER9, I find
this error message:

icc    -o xaLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o  pdb_sscanf.o pdb_write.o vector.o zMatrix.o
 sort.o bag.o hash.o  dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o  collection.o container.o internal.o list.o loop.o molecule.o  oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o tripos.o graphUtil.o select.o amber.o build.o elements.o library.o chirality.o minimizer.o model.o parmLib.o pdbFile.o tools.o variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o restraint.o hybrid.o xTank.o xAction.o x3d.o xBasics.o  xaLeapc.o xaUnitEditor.o xaTable.o xaAtomTable.o  XrawRegistr.o xaCommand.o xaTools.o  xaAtomParmTable.o xaBondParmTable.o  xaAngleParmTable.o xaParmEditor.o xaTorsionParmTable.o xaImproperParmTable.o xaHBondParmTable.o ../Xraw/libXaw.a ../Wc/libWcLeap.a ../Xpm/libXpm.a ../Xmu/libXmu.a -L/usr/X11R6/lib64 -L/usr/X11R6/lib -lXt -lXext -lSM -lICE -lX11 -lm -lpthread
IPO link: can not find -lXt
icc: error: problem during multi-file optimization compilation (code 1)

$ icc -v
Version 9.1

Looking forward to your replies. Thank you very much for your efforts.

Shaoqing Zhang
Department of Physics
University of Houston

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Received on Sun Jan 07 2007 - 06:07:50 PST
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