AMBER: DNA structure analysis

From: Catein Catherine <>
Date: Wed, 17 Jan 2007 11:12:42 +0800

Dear Sir/Madam,

I have done a 1 ns MD for a DNA-intercalator structure, I could like to
analysis the twist, rise, roll of the flanking base pair and the sugar
puckering along the trajectory. Could you mind to teach me how to do this
with amber or any other free softwares?

Thank you!

Best regards,


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Received on Wed Jan 17 2007 - 06:08:39 PST
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