Amber Archive Apr 2019: by date

Sunday, 31 March 2019
- [AMBER] How the instantaneous temperature is calculated in Amber ? Marek Maly
- [AMBER] How to build the central fragment of a modified nucleotide in the AMBER force fields 21818674.zju.edu.cn
- Re: [AMBER] How the instantaneous temperature is calculated in Amber ? Marek Maly
- Re: [AMBER] How the instantaneous temperature is calculated in Amber ? Marek Maly
- Re: [AMBER] huge reference.frc in MMPBSA Antoine Marion
Monday, 1 April 2019
- [AMBER] Fwd: AMBER Digest, Vol 2600, Issue 1 SATYAJIT KHATUA
- Re: [AMBER] NFE error: Cannot read &abmd namelist Jason Imamoto
- [AMBER] Equilibration in multiple steps with decrement in force constants Priyabrata Das
- Re: [AMBER] Equilibration in multiple steps with decrement in force constants Carlos Simmerling
- Re: [AMBER] How the instantaneous temperature is calculated in Amber ? Carlos Simmerling
- Re: [AMBER] Equilibration in multiple steps with decrement in force constants Priyabrata Das
- [AMBER] New compile-issue macOS, CPPTRAJ Gustaf Olsson
- Re: [AMBER] Equilibration in multiple steps with decrement in force constants Carlos Simmerling
- Re: [AMBER] New compile-issue macOS, CPPTRAJ David A Case
- Re: [AMBER] New compile-issue macOS, CPPTRAJ Daniel Roe
- Re: [AMBER] varying pressure conditions? Shayna Hilburg
- Re: [AMBER] varying pressure conditions? Carlos Simmerling
- Re: [AMBER] Problems calculating density over distance Lucas Bandeira
- Re: [AMBER] Equilibration in multiple steps with decrement in force constants Priyabrata Das
- Re: [AMBER] How the instantaneous temperature is calculated in Amber ? Marek Maly
- Re: [AMBER] Equilibration in multiple steps with decrement in force constants Carlos Simmerling
Tuesday, 2 April 2019
- Re: [AMBER] New compile-issue macOS, CPPTRAJ Gustaf Olsson
- [AMBER] regarding simulation Charu Sharma (JRF)
- [AMBER] Box with a “separator” Alessandro Mariani
- [AMBER] Negative dihedral angle n glycan simulation Rajarshi Roy
- [AMBER] leap duplicates bond ('triangular' bond) warning Fabian Glaser
- Re: [AMBER] regarding simulation David A Case
- Re: [AMBER] leap duplicates bond ('triangular' bond) warning Pietro Aronica
- Re: [AMBER] New compile-issue macOS, CPPTRAJ Gustaf Olsson
- Re: [AMBER] New compile-issue macOS, CPPTRAJ Hai Nguyen
- Re: [AMBER] New compile-issue macOS, CPPTRAJ Gustaf Olsson
- Re: [AMBER] New compile-issue macOS, CPPTRAJ Hai Nguyen
- [AMBER] rms2d analysis Debarati DasGupta
- Re: [AMBER] rms2d analysis Daniel Roe
- Re: [AMBER] NFE error: Cannot read &abmd namelist Feng Pan
- [AMBER] KeyError: 4018 for iron containing enzyme (prolyl hydroxylase) Mahesh kumar Teli
- Re: [AMBER] New compile-issue macOS, CPPTRAJ Gustaf Olsson
Wednesday, 3 April 2019
- [AMBER] tests with different # of threads Vaibhav Dixit
- Re: [AMBER] New compile-issue macOS, CPPTRAJ David A Case
- Re: [AMBER] tests with different # of threads David A Case
- Re: [AMBER] KeyError: 4018 for iron containing enzyme (prolyl hydroxylase) Aashish Bhatt
- Re: [AMBER] New compile-issue macOS, CPPTRAJ Hai Nguyen
- Re: [AMBER] New compile-issue macOS, CPPTRAJ Hai Nguyen
- Re: [AMBER] rms2d analysis Debarati DasGupta
- [AMBER] cudaMemcpyToSymbol: SetSim copy to cSim failed invalid device symbol ( GeForce RTX 2080) bjyx20090941
- Re: [AMBER] cudaMemcpyToSymbol: SetSim copy to cSim failed invalid device symbol ( GeForce RTX 2080) accuratefreeenergy.gmail.com
- Re: [AMBER] New compile-issue macOS, CPPTRAJ David A Case
- Re: [AMBER] KeyError: 4018 for iron containing enzyme (prolyl hydroxylase) Mahesh kumar Teli
- Re: [AMBER] cudaMemcpyToSymbol: SetSim copy to cSim failed bjyx20090941
Thursday, 4 April 2019
- [AMBER] mmpbsa error MYRIAN TORRES RICO
- [AMBER] mmpbsa error MYRIAN TORRES RICO
- Re: [AMBER] New compile-issue macOS, CPPTRAJ Gustaf Olsson
- Re: [AMBER] New compile-issue macOS, CPPTRAJ Daniel Roe
- Re: [AMBER] New compile-issue macOS, CPPTRAJ Gustaf Olsson
- Re: [AMBER] cudaMemcpyToSymbol: SetSim copy to cSim failed Ross Walker
- Re: [AMBER] tests with different # of threads Vaibhav Dixit
- [AMBER] Problem calculating water density over distance Lucas Bandeira
- Re: [AMBER] metal-oxide-metal interactions Pengfei Li
Friday, 5 April 2019
- Re: [AMBER] New compile-issue macOS, CPPTRAJ David A Case
- Re: [AMBER] mmpbsa error Daniel Roe
- [AMBER] location related redox-potential? Feng, Zimin
- [AMBER] Can Amber constant pH run with CHARMM force field? Chen Yifan
- [AMBER] 2 job positions InterX Inc. Molecular Simulation and Molecular ForceField Scientists Ganesh Kamath
- Re: [AMBER] Can Amber constant pH run with CHARMM force field? Feng, Zimin
- [AMBER] outtraj question Xiaoyu Wang
- Re: [AMBER] Can Amber constant pH run with CHARMM force field? Cruzeiro,Vinicius Wilian D
- Re: [AMBER] location related redox-potential? Cruzeiro,Vinicius Wilian D
- Re: [AMBER] Can Amber constant pH run with CHARMM force field? Chen Yifan
- Re: [AMBER] metal parameters Fabian Glaser
- [AMBER] pmemd.CUDA vs pmemd.MPI for equilibration of protein-ligand and trajectory identification for mmpbsa Prasanth G, Research Scholar
Saturday, 6 April 2019
- [AMBER] 2 job positions InterX Inc. Molecular Simulation and Molecular ForceField Scientists Ganesh Kamath
- Re: [AMBER] metal parameters Pengfei Li
Sunday, 7 April 2019
- Re: [AMBER] preparing a new pdb Boutheïna KERKENI
- [AMBER] Ligand Splitting Issue Tamsila Parveen
- Re: [AMBER] location related redox-potential? Feng, Zimin
- Re: [AMBER] Can Amber constant pH run with CHARMM force field? Jason Swails
- Re: [AMBER] Ligand Splitting Issue David Case
Monday, 8 April 2019
- [AMBER] Error working with pytleap ARITRA MITRA
- Re: [AMBER] Error working with pytleap David A Case
- Re: [AMBER] New compile-issue macOS, CPPTRAJ David A Case
- [AMBER] Problem in setting parameters for the modified nucleotide Xiaoting Mao
- Re: [AMBER] New compile-issue macOS, CPPTRAJ Gustaf Olsson
- Re: [AMBER] Negative dihedral angle n glycan simulation Lachele Foley
- Re: [AMBER] Negative dihedral angle n glycan simulation Lachele Foley
- [AMBER] Creating a water model from scratch Gustavo Seabra
- Re: [AMBER] Creating a water model from scratch David Cerutti
- [AMBER] secstruct issue in CPPTRAJ SARAH JEANNE LEFAVE
- [AMBER] Question about QM/MM simulation in vacuum connecting Amber and Gaussian 09 package 王婷婷
- Re: [AMBER] Question about QM/MM simulation in vacuum connecting Amber and Gaussian 09 package Roitberg,Adrian E
Tuesday, 9 April 2019
- Re: [AMBER] Negative dihedral angle n glycan simulation Rajarshi Roy
- [AMBER] mmpbsa MYRIAN TORRES RICO
- [AMBER] Calculate zero point energy for a protein (no ligand) system Akshay Prabhakant
- Re: [AMBER] Calculate zero point energy for a protein (no ligand) system Carlos Simmerling
- Re: [AMBER] Calculate zero point energy for a protein (no ligand) system Robert Molt
- Re: [AMBER] Calculate zero point energy for a protein (no ligand) system Akshay Prabhakant
- Re: [AMBER] Calculate zero point energy for a protein (no ligand) system Carlos Simmerling
- Re: [AMBER] Calculate zero point energy for a protein (no ligand) system Akshay Prabhakant
- Re: [AMBER] Negative dihedral angle n glycan simulation Lachele Foley
- Re: [AMBER] Calculate zero point energy for a protein (no ligand) system MOHD HOMAIDUR RAHMAN
- Re: [AMBER] mmpbsa Chris Moth
- [AMBER] Force field parameters for modified amino acid residues (carboxy glutamates) Tanusree S
Wednesday, 10 April 2019
- [AMBER] Patches for AmberTools18 viktor drobot
- Re: [AMBER] Patches for AmberTools18 Stephan Schott
- [AMBER] REGARDING MPI Charu Sharma (JRF)
- Re: [AMBER] secstruct issue in CPPTRAJ Daniel Roe
- Re: [AMBER] Negative dihedral angle n glycan simulation Lachele Foley
- Re: [AMBER] secstruct issue in CPPTRAJ Daniel Roe
- Re: [AMBER] Patches for AmberTools18 Hai Nguyen
- [AMBER] Question about chemical reaction in vacuum with adding an extra reaction field (Specify dielectric constant in vacuum) 王婷婷
- [AMBER] parameters for isolated zwitter ion tyrosine angad sharma
- Re: [AMBER] parameters for isolated zwitter ion tyrosine Elvis Martis
Thursday, 11 April 2019
- [AMBER] Capping RNA Mihaljevic-Juric Paula (Mme)
- [AMBER] cReAtInG PDB Boutheïna KERKENI
- Re: [AMBER] Negative dihedral angle n glycan simulation Irfan Alibay
- Re: [AMBER] Question about chemical reaction in vacuum with adding an extra reaction field (Specify dielectric constant in vacuum) David A Case
- Re: [AMBER] Capping RNA David A Case
- Re: [AMBER] cReAtInG PDB David A Case
- [AMBER] T4 vs RTX2080Ti Giovanni Grazioso
- Re: [AMBER] T4 vs RTX2080Ti Shenglong Wang
- [AMBER] COM Dihedral Restraint Kung, Ryan
- [AMBER] Problem calculating water mass density over distance Lucas Bandeira
- Re: [AMBER] Problem calculating water mass density over distance Gerardo Zerbetto De Palma
- Re: [AMBER] Problem calculating water mass density over distance Lucas Bandeira
- Re: [AMBER] COM Dihedral Restraint Kellon Belfon
- Re: [AMBER] Problem calculating water mass density over distance Gerardo Zerbetto De Palma
- Re: [AMBER] Negative dihedral angle n glycan simulation Rajarshi Roy
- Re: [AMBER] Problem calculating water mass density over distance Lucas Bandeira
- Re: [AMBER] Negative dihedral angle n glycan simulation Rajarshi Roy
- Re: [AMBER] Problem calculating water mass density over distance Gerardo Zerbetto De Palma
- [AMBER] Electrostatic interactions in LIE method Debarati DasGupta
- [AMBER] namd and amber md energies do not match Akshay Prabhakant
- Re: [AMBER] Question about chemical reaction in vacuum with adding an extra reaction field (Specify dielectric constant in vacuum) 王婷婷
Friday, 12 April 2019
- Re: [AMBER] charged residue mutation free energy Hosein Geraili Daronkola
- [AMBER] Confusion regarding ff14SB and ff99SBildn forcefields RITUPARNA ROY
- Re: [AMBER] Confusion regarding ff14SB and ff99SBildn forcefields David Cerutti
- [AMBER] How to source oldff in tleap Saikat Pal
- Re: [AMBER] How to source oldff in tleap Saikat Pal
- Re: [AMBER] How to source oldff in tleap Carlos Simmerling
- Re: [AMBER] namd and amber md energies do not match David A Case
- Re: [AMBER] How to source oldff in tleap David A Case
- [AMBER] Question about NEB Lillian Chong
- [AMBER] Problems in setting parameters for the modified nucleotide Xiaoting Mao
- [AMBER] silver parameters Uroš Javornik
- Re: [AMBER] silver parameters Christina Bergonzo
- Re: [AMBER] T4 vs RTX2080Ti David Cerutti
- [AMBER] pdb4amber install w/ conda Paul, Austin
- Re: [AMBER] pdb4amber install w/ conda Hai Nguyen
- Re: [AMBER] pdb4amber install w/ conda Hai Nguyen
Saturday, 13 April 2019
- [AMBER] Save RST from mdcrd containing velocities Yuliana Bosken
- Re: [AMBER] Problem in setting parameters for non standard DG residue:O6-Methylguanine Xiaoting Mao
- [AMBER] Guidance on WHAM Daniel Fernández Remacha
Monday, 15 April 2019
- [AMBER] RTX 2070 GPU Card Ajeet Kumar Yadav
- [AMBER] Atoms per processor Charo del Genio
- Re: [AMBER] Atoms per processor David A Case
- [AMBER] mdgx CreateBellyMask error Anthony Bogetti
- Re: [AMBER] mdgx CreateBellyMask error David Cerutti
- [AMBER] Fixing few box dimensions in semiisotropic/anisotropic pressure scaling Kyeong-jun Jeong
- Re: [AMBER] namd and amber md energies do not match Akshay Prabhakant
Tuesday, 16 April 2019
- [AMBER] How to use GaMD in amber16 ATUL KUMAR
- Re: [AMBER] secstruct issue in CPPTRAJ Daniel Roe
- Re: [AMBER] [UCE] Re: secstruct issue in CPPTRAJ SARAH JEANNE LEFAVE
- Re: [AMBER] Fixing few box dimensions in semiisotropic/anisotropic pressure scaling David A Case
- [AMBER] Problems in forcefield parameterization of Mercury Muthukumaran Rajagopalan
- Re: [AMBER] Guidance on WHAM Zachary Fallon
- Re: [AMBER] Guidance on WHAM Carlos Simmerling
- [AMBER] How to select dihedral angles to reweight accelerated molecular dynamics simulation of protein Mayank Dixit
- Re: [AMBER] Problems in forcefield parameterization of Mercury Pengfei Li
- Re: [AMBER] Problems in forcefield parameterization of Mercury Muthukumaran Rajagopalan
- [AMBER] pKa calculation Tanmoy Paul
Wednesday, 17 April 2019
- Re: [AMBER] How to select dihedral angles to reweight accelerated molecular dynamics simulation of protein Chetna Tyagi
- [AMBER] mol2 files for FEW Zhonghua Xia
- Re: [AMBER] Guidance on WHAM Daniel Fernández Remacha
- Re: [AMBER] mol2 files for FEW David A Case
- [AMBER] Mg2+_preparation_general_rule Antonio Amber Carlesso
- Re: [AMBER] Mg2+_preparation_general_rule Antonio Amber Carlesso
- Re: [AMBER] Guidance on WHAM Zachary Fallon
Thursday, 18 April 2019
- [AMBER] More macOS compilation issues.... Gustaf Olsson
- [AMBER] AMBER - Heating MD Systems An Ta
- Re: [AMBER] AMBER - Heating MD Systems Carlos Simmerling
- Re: [AMBER] AMBER - Heating MD Systems An Ta
- Re: [AMBER] More macOS compilation issues.... Hai Nguyen
- Re: [AMBER] How to select dihedral angles to reweight accelerated molecular dynamics simulation of protein Mayank Dixit
- Re: [AMBER] AMBER - Heating MD Systems Lin Song
- [AMBER] "Problem installing Miniconda" Seibold, Steve Allan
- Re: [AMBER] AMBER - Heating MD Systems Carlos Simmerling
- Re: [AMBER] "Problem installing Miniconda" Hai Nguyen
- [AMBER] Force field for C-C Di-Tyrosine Linkage Bharat Manna
- Re: [AMBER] More macOS compilation issues.... David A Case
- Re: [AMBER] "Problem installing Miniconda" David A Case
- Re: [AMBER] AMBER - Heating MD Systems An Ta
- Re: [AMBER] Save RST from mdcrd containing velocities Daniel Roe
- Re: [AMBER] "Problem installing Miniconda" Hai Nguyen
- Re: [AMBER] Guidance on WHAM Daniel Fernández Remacha
- Re: [AMBER] "Problem installing Miniconda" Seibold, Steve Allan
- Re: [AMBER] Guidance on WHAM Zachary Fallon
- [AMBER] RTX-2070 supported(untested)? Yeyue Xiong
- Re: [AMBER] RTX-2070 supported(untested)? David Cerutti
Friday, 19 April 2019
- Re: [AMBER] RTX-2070 supported(untested)? Carlos Simmerling
- Re: [AMBER] RTX-2070 supported(untested)? Bill Ross
- [AMBER] MM PBSA - clarification Prasanth G, Research Scholar
- Re: [AMBER] MM PBSA - clarification Ray Luo
- [AMBER] smflags in configure script viktor drobot
- Re: [AMBER] Problems in forcefield parameterization of Mercury Pengfei Li
- [AMBER] trouble in amberFATA: Atom doesn't have a type Maximilien BERNE
- Re: [AMBER] trouble in amberFATA: Atom doesn't have a type Sally Pias
- [AMBER] Change the trajectory format. Parviz Seifpanahi Shabane
Sunday, 21 April 2019
- Re: [AMBER] More macOS compilation issues.... Gustaf Olsson
- Re: [AMBER] More macOS compilation issues.... Gustaf Olsson
- Re: [AMBER] MM PBSA - clarification Prasanth G, Research Scholar
Monday, 22 April 2019
- [AMBER] possible bug in charmmlipid2amber.py liu junjun
- [AMBER] Suggestions on running a qm-mm simulation for studying a group transfer reaction Prayagraj Fandilolu
- [AMBER] regarding radius of gyration angad sharma
- Re: [AMBER] MM PBSA - clarification Thomas Evangelidis
- Re: [AMBER] regarding radius of gyration Carlos Simmerling
- Re: [AMBER] smflags in configure script Charles Lin
- [AMBER] Computing forces by trajectory post-processing with sander Casalini Tommaso
- Re: [AMBER] smflags in configure script David A Case
- Re: [AMBER] More macOS compilation issues.... David A Case
- Re: [AMBER] Computing forces by trajectory post-processing with sander Alen Ahmetovic
- Re: [AMBER] Computing forces by trajectory post-processing with sander Yuliana Bosken
- [AMBER] problem in locating Aqvist Mg2+ parameter in amber ATUL KUMAR
- Re: [AMBER] More macOS compilation issues.... Gustaf Olsson
- [AMBER] A-DNA Charu Sharma (JRF)
Tuesday, 23 April 2019
- Re: [AMBER] A-DNA David Case
- Re: [AMBER] problem in locating Aqvist Mg2+ parameter in amber David Case
- [AMBER] Issue with cpptraj.MPI Benard, Dany
- Re: [AMBER] Issue with cpptraj.MPI Pratul Agarwal
- Re: [AMBER] Issue with cpptraj.MPI Daniel Roe
- Re: [AMBER] Issue with cpptraj.MPI Pratul Agarwal
- Re: [AMBER] Issue with cpptraj.MPI Benard, Dany
- Re: [AMBER] Issue with cpptraj.MPI Daniel Roe
- Re: [AMBER] Computing forces by trajectory post-processing with sander Daniel Roe
- [AMBER] saving output of Gaussian accelerated MD Qinghua Liao
- Re: [AMBER] A-DNA Charu Sharma (JRF)
- [AMBER] charge in constant redox cein file vs. prmtop file Feng, Zimin
- Re: [AMBER] charge in constant redox cein file vs. prmtop file Cruzeiro,Vinicius Wilian D
- [AMBER] styrene sulfonate molecule building using xleap Shilpa Gupta
Wednesday, 24 April 2019
- Re: [AMBER] Computing forces by trajectory post-processing with sander Casalini Tommaso
- [AMBER] Problem with heating the system ATUL KUMAR
- Re: [AMBER] Problem with heating the system Bill Ross
- Re: [AMBER] Problem with heating the system ATUL KUMAR
- [AMBER] secondary structure angad sharma
- Re: [AMBER] styrene sulfonate molecule building using xleap David A Case
- Re: [AMBER] Problem with heating the system David A Case
- Re: [AMBER] Problem with heating the system ATUL KUMAR
- Re: [AMBER] secondary structure Carlos Simmerling
- Re: [AMBER] Problem with heating the system Pratul Agarwal
- Re: [AMBER] charge in constant redox cein file vs. prmtop file Feng, Zimin
- Re: [AMBER] charge in constant redox cein file vs. prmtop file Cruzeiro,Vinicius Wilian D
- Re: [AMBER] charge in constant redox cein file vs. prmtop file Feng, Zimin
- Re: [AMBER] Change the trajectory format. Thomas Cheatham
Thursday, 25 April 2019
- [AMBER] Targeted MD Elena Gomez
- Re: [AMBER] Change the trajectory format. Daniel Roe
- Re: [AMBER] Targeted MD Carlos Simmerling
- [AMBER] issues with pmemd.cuda Veenis, Andrew Jay
Tuesday, 23 April 2019
- [AMBER] processing trajectories subjected to GIST analysis Alfredo Quevedo
Thursday, 25 April 2019
- Re: [AMBER] issues with pmemd.cuda David A Case
- [AMBER] Simulation with Protein, cofactor and Ligand Prasanth G, Research Scholar
- Re: [AMBER] More macOS compilation issues.... Gustaf Olsson
- [AMBER] Antechamber question David Poole
- [AMBER] setting up triplicate runs Yin, Guowei
- Re: [AMBER] setting up triplicate runs David Cerutti
- Re: [AMBER] More macOS compilation issues.... Gustaf Olsson
Friday, 26 April 2019
- [AMBER] dihedral scanning with GAFF and GAFF2 Qasim Pars
- Re: [AMBER] More macOS compilation issues.... David A Case
- Re: [AMBER] issues with pmemd.cuda Veenis, Andrew Jay
- [AMBER] Any help on how to implement it in cpptraj? Debarati DasGupta
- [AMBER] Release of AmberTools19 David Case
- Re: [AMBER] Negative dihedral angle n glycan simulation Lachele Foley
- Re: [AMBER] Negative dihedral angle n glycan simulation Rajarshi Roy
- Re: [AMBER] More macOS compilation issues.... Gustaf Olsson
Saturday, 27 April 2019
- [AMBER] AmberTools19 - macOS 10.14.4 - Xcode 10.2.1 - clang Gustaf Olsson
- [AMBER] NpT simulations in interfacial system Lucas Bandeira
- Re: [AMBER] AmberTools19 - macOS 10.14.4 - Xcode 10.2.1 - clang Hai Nguyen
- Re: [AMBER] AmberTools19 - macOS 10.14.4 - Xcode 10.2.1 - clang Gustaf Olsson
- [AMBER] AmberTools19 - macOS 10.14.4 - Xcode 10.2.1 - GCC8.3 Gustaf Olsson
- [AMBER] xleap display Yin, Guowei
- Re: [AMBER] xleap display Bill Ross
- Re: [AMBER] xleap display Bill Ross
- Re: [AMBER] xleap display Pratul Agarwal
- Re: [AMBER] xleap display Bill Ross
- Re: [AMBER] xleap display Yin, Guowei
- Re: [AMBER] xleap display Bill Ross
Sunday, 28 April 2019
- Re: [AMBER] xleap display Gustaf Olsson
- Re: [AMBER] AmberTools19 - macOS 10.14.4 - Xcode 10.2.1 - clang David Case
- Re: [AMBER] NpT simulations in interfacial system David Case
- [AMBER] Novel Force Field Parameters for Aromatic Dihedrals Erdem Yeler
- Re: [AMBER] AmberTools19 - macOS 10.14.4 - Xcode 10.2.1 - clang Gustaf Olsson
Monday, 29 April 2019
- [AMBER] WHAM umbrella PMF of ligand Z diffusion on lipid molecule zmatovic.kg.ac.rs
- [AMBER] constant-pressure equilibration with a water droplet Anthony Bogetti
- Re: [AMBER] constant-pressure equilibration with a water droplet Carlos Simmerling
- Re: [AMBER] constant-pressure equilibration with a water droplet David A Case
- [AMBER] Why is SPAM throwing errors when I see none in my input files or trajectories. Debarati DasGupta
- [AMBER] Regarding cosine content calculation in AMBER Rajarshi Roy
Tuesday, 30 April 2019
- [AMBER] mmpbsa error MYRIAN TORRES RICO
- Re: [AMBER] mmpbsa error David A Case
- Re: [AMBER] Why is SPAM throwing errors when I see none in my input files or trajectories. Daniel Roe
- Re: [AMBER] Regarding cosine content calculation in AMBER Daniel Roe
- Re: [AMBER] Any help on how to implement it in cpptraj? Daniel Roe
- Re: [AMBER] processing trajectories subjected to GIST analysis Daniel Roe
- Re: [AMBER] outtraj question Daniel Roe
- Re: [AMBER] mol2 files for FEW Zhonghua Xia
- Re: [AMBER] Regarding cosine content calculation in AMBER Rajarshi Roy
- Re: [AMBER] Regarding cosine content calculation in AMBER Pratul Agarwal
- Re: [AMBER] Regarding cosine content calculation in AMBER Rajarshi Roy
- Re: [AMBER] mmpbsa error MYRIAN TORRES RICO
- Re: [AMBER] Regarding cosine content calculation in AMBER Pratul Agarwal
- [AMBER] CPPTRAJ gnu extension not working anu chandra
- Re: [AMBER] Regarding cosine content calculation in AMBER Rajarshi Roy
- [AMBER] [rok.ucsd.edu: AT19 cpptraj MPI build issue (Linux, x86_64, gnu)] David A Case

Last message date: Tue Apr 30 2019 - 13:00:03 PDT
Archived on: Fri Apr 19 2024 - 05:55:34 PDT

Amber Archive Apr 2019 by date