From: David Case <>
Date: Tue, 23 Apr 2019 12:13:52 +0000

On Tue, Apr 23, 2019, Charu Sharma (JRF) wrote:

>I would like to know how one should work on A-DNA simulation if we dont
>have mpi installation ? how we can get its RMSD PLOT.

Are you referring to some tutorial here? Otherwise, I don't see how the
presence (or not) of MPI has anything to do with either A-DNA or RMSD
plots: if you don't have MPI, then don't try to run sander.MPI or pmemd.MPI.

RMSD analysis is generally done via cpptraj.

...good luck....dac

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Received on Tue Apr 23 2019 - 05:30:03 PDT
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