Re: [AMBER] AMBER - Heating MD Systems

From: Carlos Simmerling <carlos.simmerling.gmail.com>
Date: Thu, 18 Apr 2019 09:03:41 -0400

1) did you minimize first? This is usually needed.
2) do you have any unusual force field parameters? That is often the
problem with instabilities.

On Thu, Apr 18, 2019, 8:49 AM An Ta <anta.mymail.mines.edu> wrote:

> Dear fellow AMBER users,
>
> I have been attempting to heat up a system in different heating stages
> (e.g. (1) Heat from 0-50K, (2) Heat 50-100K, and so forth). But I noticed
> in my output file that the temperature is exceeding what I have specified
> for the heating simulation. This is my first time trying to heat a system
> up and I was wondering if I may have specified some parameter incorrectly.
> I have attached my input file and a corresponding output for reference.
>
> Thank you for your time and any advisement,
>
> *An Tien Ta*
> Chemistry Ph.D Candidate
> Colorado School of Mines || Department of Chemistry
> Coolbaugh Hall, Rm. 118
> Golden, CO 80401
> anta.mines.edu
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Received on Thu Apr 18 2019 - 06:30:02 PDT
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