Dear Users,
I have performed accelerated molecular dynamics
simulations (AMD) of protein in water by using dihedral boost and potential
boost.
I read the tutorial "
http://ambermd.org/tutorials/advanced/tutorial22/section3.htm". They are
saying to select two dihedral angles among backbone atoms of three
residues.
Please let me know which three residues of protein (number of residues
398) I should select to reweight AMD results.
Please help me in fixing this issue.
Thanks and regards
MD
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Received on Tue Apr 16 2019 - 18:00:02 PDT
