[AMBER] How to select dihedral angles to reweight accelerated molecular dynamics simulation of protein

From: Mayank Dixit <mdixit.binghamton.edu>
Date: Tue, 16 Apr 2019 20:48:47 -0400

Dear Users,
                  I have performed accelerated molecular dynamics
simulations (AMD) of protein in water by using dihedral boost and potential
I read the tutorial "
http://ambermd.org/tutorials/advanced/tutorial22/section3.htm". They are
saying to select two dihedral angles among backbone atoms of three
Please let me know which three residues of protein (number of residues
398) I should select to reweight AMD results.
Please help me in fixing this issue.
Thanks and regards
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Received on Tue Apr 16 2019 - 18:00:02 PDT
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