Re: [AMBER] "Problem installing Miniconda"

From: Hai Nguyen <nhai.qn.gmail.com>
Date: Thu, 18 Apr 2019 11:57:55 -0400

hi,

You can use it with --with-python

./configure --with-python /path/to/your/python gnu

Otherwise, you can try to edit AmberTools/src/configure_python by deleting
"nomkl" (which will make configure_python install very large block of "mkl")

cheers
Hai

On Thu, Apr 18, 2019 at 11:43 AM Seibold, Steve Allan <stevesei.ku.edu>
wrote:

> I am attempting to install AMBER16 on a Ubuntu 16 OS. I have installed
> python 2.7.12. I get the following error when I run "./configure gnu" for
> my serial build ( I will follow this with the mpi build):
>
> ============================================================
>
> Error: Dependency missing in current linux-64 channels:
> - nomkl -> blas * openblas
>
> You can search for this package on anaconda.org with
>
> anaconda search -t conda blas * openblas
>
> You may need to install the anaconda-client command line client with
>
> conda install anaconda-client
> Error occurred during Python install:
>
> Installing packages
> Problem installing Miniconda... see error above.
> Configure failed due to the errors above!
> ======================================================================
>
>
> I then installed "openblas" using:
>
> sudo apt-get install libopenblas-dev
>
> This installed it.
>
> This seemed to work (i.e. ./configure gnu did run) , but I guess this did
> not correct the "Miniconda" problem because when I ran "make -j8 install" I
> get the error that "amber.python" as with amber.ipython etc..was not
> created and installal in the /bin directory...
>
>
> I noticed that the program "conda" is found in the "miniconda" directory.
> I just am not sure what to do now..? Can someone assist me??
>
>
> Thanks, Steve
>
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Received on Thu Apr 18 2019 - 09:00:05 PDT
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