Hello Amber users,
I am trying to visualize the matrix output from cross correlation analysis
in gnuplot, by using a .gnu extension. However, gnu output file failed have
required gnuplot heads. The following cpptraj command was used for the
analysis.
parm parm.top
trajin 1md.nc
trip :WAT,Na+
autoimage origin
reference pdb1.pdb
rms reference out rmsd_CA_1-450.txt :1-450.CA
matrix correl :1-450.CA out matrix.gnu byatom
However, the file 'matrix.gnu' do not have the required gnuplot labels.
1.000 1.000 1.000
1.000 2.000 0.814
1.000 3.000 0.568
1.000 4.000 0.354
1.000 5.000 0.182
Any help would be highly appreciated
Many thanks in advance
Anu
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Apr 30 2019 - 10:30:02 PDT
