Amber Archive Jan 2019: by subject

[AMBER-Developers] [AMBER] Error with mdnab from amberlite
- David A Case (Thu Jan 03 2019 - 06:09:33 PST)
[AMBER] "make test" 1 errors occur
- changseo park (Tue Jan 15 2019 - 04:16:46 PST)
- David Case (Sat Jan 12 2019 - 13:48:30 PST)
- changseo park (Fri Jan 11 2019 - 04:30:31 PST)
[AMBER] "vlimit exceeded" in NVT simulation
- Pratul Agarwal (Tue Jan 08 2019 - 07:24:14 PST)
- Lucas Bandeira (Tue Jan 08 2019 - 07:07:03 PST)
[AMBER] 2 types of Chlorine atom (one charge is -1 and other is -0.8)
- David A Case (Wed Jan 23 2019 - 04:46:10 PST)
- Saikat Pal (Tue Jan 22 2019 - 22:13:49 PST)
[AMBER] [MGMS-DS]: Molecular Modelling Workshop + Tim Clark Birthday Symposium: April 08-11, 2019 in Erlangen, Germany
- Dr. Anselm Horn (Fri Jan 18 2019 - 01:13:18 PST)
[AMBER] Abrupt peaks in the RMSD plot of heating trajectory
- ABEL Stephane (Wed Jan 16 2019 - 10:40:05 PST)
- Adrian Roitberg (Wed Jan 16 2019 - 10:31:42 PST)
- Amartya Pradhan (Wed Jan 16 2019 - 10:29:36 PST)
[AMBER] Amber energy minimization and the energy unit
- Pratul Agarwal (Fri Jan 11 2019 - 04:19:26 PST)
- Vasantha Kumar (Thu Jan 10 2019 - 20:45:10 PST)
[AMBER] Amber force-filed parameters for amino-acid side chain analogues
- David Cerutti (Thu Jan 31 2019 - 05:34:13 PST)
- mish (Thu Jan 31 2019 - 05:07:56 PST)
- David A Case (Thu Jan 31 2019 - 04:46:22 PST)
- mish (Thu Jan 31 2019 - 04:00:29 PST)
- Pratul Agarwal (Tue Jan 29 2019 - 06:18:12 PST)
- mish (Mon Jan 28 2019 - 09:15:24 PST)
[AMBER] Amber installation
- Yazan Haddad (Tue Jan 08 2019 - 07:59:28 PST)
- David A Case (Tue Jan 08 2019 - 05:56:16 PST)
- Yazan Haddad (Mon Jan 07 2019 - 23:48:58 PST)
- Yazan Haddad (Mon Jan 07 2019 - 08:07:07 PST)
[AMBER] Amber parameters for Boron atom
- David Case (Sat Jan 19 2019 - 06:34:42 PST)
- Vincenzo Maria D'Amore (Thu Jan 17 2019 - 05:48:46 PST)
[AMBER] Amber Restraint output from
- Kung, Ryan (Wed Jan 02 2019 - 14:29:35 PST)
[AMBER] AMBER v18 on BG/Q
- David A Case (Fri Jan 18 2019 - 05:57:09 PST)
- Pratul Agarwal (Thu Jan 17 2019 - 15:36:04 PST)
[AMBER] Autoimage command not working
- Martín Pettinati (Tue Jan 15 2019 - 13:26:03 PST)
- Daniel Roe (Tue Jan 15 2019 - 11:46:23 PST)
- Martín Pettinati (Tue Jan 15 2019 - 11:35:04 PST)
- Daniel Roe (Tue Jan 15 2019 - 10:51:52 PST)
- Premila Samuel Mohan Dass (Tue Jan 15 2019 - 10:50:47 PST)
- Martín Pettinati (Tue Jan 15 2019 - 10:40:44 PST)
[AMBER] average mulliken charges
- Thakur, Abhishek (Mon Jan 07 2019 - 08:50:35 PST)
[AMBER] Calculated dipole moment in AMBER
- Fulbabu Sk (Thu Jan 03 2019 - 19:21:14 PST)
- Daniel Roe (Thu Jan 03 2019 - 05:26:13 PST)
- Fulbabu Sk (Wed Jan 02 2019 - 20:39:01 PST)
- Xiaocong Wang (Wed Jan 02 2019 - 17:45:15 PST)
- Daniel Roe (Wed Jan 02 2019 - 10:52:13 PST)
- Xiaocong Wang (Wed Jan 02 2019 - 07:22:25 PST)
[AMBER] calculating am1-bcc charges from user generated mulliken charges
- Braden Kelly (Sun Jan 13 2019 - 19:10:47 PST)
- Braden Kelly (Sun Jan 13 2019 - 14:32:19 PST)
[AMBER] Calculation of binding energy associated with a single water molecule
- Pratul Agarwal (Mon Jan 28 2019 - 08:47:24 PST)
- Leena Aggarwal (Sun Jan 27 2019 - 22:04:40 PST)
[AMBER] Can't put position restrains on ions
- Pratul Agarwal (Wed Jan 16 2019 - 11:09:53 PST)
- Andrea H. Kasun (Wed Jan 16 2019 - 11:02:45 PST)
- Pratul Agarwal (Wed Jan 16 2019 - 10:49:26 PST)
- David A Case (Wed Jan 16 2019 - 10:28:24 PST)
- Andrea H. Kasun (Wed Jan 16 2019 - 07:33:48 PST)
[AMBER] Clipping radius in AddToBox
- David Cerutti (Tue Jan 08 2019 - 07:13:18 PST)
- Lucas Bandeira (Tue Jan 08 2019 - 06:58:58 PST)
- David A Case (Tue Jan 08 2019 - 06:07:09 PST)
- David Cerutti (Tue Jan 08 2019 - 06:26:38 PST)
- Lucas Bandeira (Tue Jan 08 2019 - 04:02:24 PST)
[AMBER] Combining CpHMD and aMD
- Cruzeiro,Vinicius Wilian D (Mon Jan 28 2019 - 06:22:58 PST)
- Cecilia Lindgren (Mon Jan 28 2019 - 05:13:49 PST)
- Cruzeiro,Vinicius Wilian D (Mon Jan 28 2019 - 04:36:28 PST)
- Cecilia Lindgren (Sun Jan 27 2019 - 23:26:49 PST)
- Cruzeiro,Vinicius Wilian D (Fri Jan 25 2019 - 14:00:13 PST)
- Cecilia Lindgren (Thu Jan 24 2019 - 07:37:26 PST)
[AMBER] Constant external force in the given space zone ? Thermostat working just on selected part of simulated system ?
- Marek Maly (Fri Jan 11 2019 - 06:38:54 PST)
[AMBER] Cpptraj: std::bad_alloc error
- Nikolay N. Kuzmich (Thu Jan 10 2019 - 02:30:20 PST)
- Pratul Agarwal (Wed Jan 09 2019 - 09:27:41 PST)
- Daniel Roe (Wed Jan 09 2019 - 06:48:05 PST)
- Pratul Agarwal (Wed Jan 09 2019 - 05:36:16 PST)
- Nikolay N. Kuzmich (Wed Jan 09 2019 - 03:33:45 PST)
[AMBER] Creating a coarse-grained trajectory from an all atomistic simulation
- Daniel Roe (Thu Jan 24 2019 - 07:50:36 PST)
- SARAH JEANNE LEFAVE (Wed Jan 23 2019 - 11:18:35 PST)
- David A Case (Wed Jan 23 2019 - 10:32:44 PST)
- SARAH JEANNE LEFAVE (Wed Jan 23 2019 - 07:22:01 PST)
[AMBER] CUDA and Restraint Error
- Daniel Roe (Mon Jan 07 2019 - 09:02:44 PST)
- Mehreen Ghufran (Sat Jan 05 2019 - 09:08:01 PST)
- Pratul Agarwal (Sat Jan 05 2019 - 07:05:51 PST)
- Stephan Schott (Sat Jan 05 2019 - 06:55:49 PST)
- David Case (Sat Jan 05 2019 - 06:40:39 PST)
- Kung, Ryan (Fri Jan 04 2019 - 13:51:18 PST)
[AMBER] detecting bridging waters and ions with cpptraj
- Daniel Roe (Thu Jan 24 2019 - 08:16:07 PST)
- Stefan Ivanov (Fri Jan 18 2019 - 02:48:17 PST)
[AMBER] dihedral angles
- Charles-Alexandre Mattelaer (Wed Jan 30 2019 - 08:17:55 PST)
- diego.soler.uam.es (Wed Jan 30 2019 - 08:03:55 PST)
- Hai Nguyen (Wed Jan 30 2019 - 07:57:52 PST)
- MYRIAN TORRES RICO (Wed Jan 30 2019 - 07:49:46 PST)
[AMBER] DMF
- Arkajyoti Sengupta (Sun Jan 13 2019 - 03:59:43 PST)
- Thomas Cheatham (Wed Jan 02 2019 - 19:21:23 PST)
- Arkajyoti Sengupta (Wed Jan 02 2019 - 15:37:25 PST)
[AMBER] DNA-ligand system
- David A Case (Mon Jan 21 2019 - 05:52:36 PST)
- Bill Ross (Sun Jan 20 2019 - 23:20:04 PST)
- maya nair (Sun Jan 20 2019 - 22:42:50 PST)
[AMBER] email
- MYRIAN TORRES RICO (Wed Jan 30 2019 - 07:22:07 PST)
[AMBER] Energy Calculation Mathematical Formula.
- Daniel Roe (Tue Jan 29 2019 - 05:21:51 PST)
- DHEERAJ CHITARA (Tue Jan 29 2019 - 03:57:32 PST)
[AMBER] Entropy calculation with Interaction Entropy (IE) method
- Fulbabu Sk (Fri Jan 18 2019 - 12:03:36 PST)
[AMBER] Error Amber18 installation with Intel 19 compiler
- David Case (Sat Jan 26 2019 - 14:02:25 PST)
- Bundit BOONYARIT (Fri Jan 25 2019 - 12:56:55 PST)
[AMBER] Error in conversion from charmmgui to AMBER format
- Sally Pias (Mon Jan 28 2019 - 13:35:09 PST)
- Souvik Dey (Thu Jan 24 2019 - 16:21:03 PST)
[AMBER] Error while running MMPBSA.py
- Shagun Krishna (Wed Jan 30 2019 - 10:08:37 PST)
[AMBER] error with HEM parm
- Matthew Fisher (Wed Jan 02 2019 - 06:16:29 PST)
- David A Case (Wed Jan 02 2019 - 05:37:33 PST)
- Mohammad Salem (Tue Jan 01 2019 - 20:21:02 PST)
[AMBER] Error with mdnab from amberlite
- Sundar (Fri Jan 04 2019 - 21:08:06 PST)
- Sundar (Wed Jan 02 2019 - 17:30:57 PST)
[AMBER] Failed to compile mcres.F90 of Amber18+update.10 with ifort
- David A Case (Fri Jan 25 2019 - 07:36:09 PST)
- Charles Lin (Fri Jan 25 2019 - 07:09:19 PST)
- Motoshi Kamiya (Fri Jan 25 2019 - 00:58:21 PST)
[AMBER] Fwd: Amber parameters for Boron atom
- Vincenzo Maria D'Amore (Mon Jan 21 2019 - 02:17:43 PST)
- David Case (Sat Jan 19 2019 - 17:47:46 PST)
- Vincenzo Maria D'Amore (Sat Jan 19 2019 - 10:23:51 PST)
[AMBER] GPU cards RTX 2080Ti and Nvidia quadro 16GB RTX 5000
- madhumalar arumugam (Thu Jan 24 2019 - 03:35:39 PST)
[AMBER] gpu_shuttle_post_data can't work in the implicit solvent
- David Cerutti (Sat Jan 12 2019 - 02:08:26 PST)
- 张浩淼 (Fri Jan 11 2019 - 21:23:22 PST)
[AMBER] How to convert a NetCDF format trajectory to separate PDB files in sequential order frame by frame
- Alechania Misturini (Thu Jan 17 2019 - 15:35:57 PST)
- Li, Dailin (Thu Jan 17 2019 - 15:10:19 PST)
[AMBER] How to load and visualize large trajectories?
- Hai Nguyen (Tue Jan 22 2019 - 20:55:04 PST)
- Chetna Tyagi (Mon Jan 21 2019 - 01:08:11 PST)
- James Kress (Fri Jan 18 2019 - 13:50:55 PST)
- Hai Nguyen (Fri Jan 18 2019 - 12:46:26 PST)
- Chetna Tyagi (Wed Jan 09 2019 - 08:09:51 PST)
- Daniel Roe (Wed Jan 09 2019 - 08:13:52 PST)
- Chetna Tyagi (Wed Jan 09 2019 - 04:32:41 PST)
- Chetna Tyagi (Wed Jan 09 2019 - 04:58:53 PST)
- Qinghua Liao (Wed Jan 09 2019 - 04:38:41 PST)
- Mehreen Ghufran (Wed Jan 09 2019 - 04:59:17 PST)
- Chetna Tyagi (Wed Jan 09 2019 - 04:22:29 PST)
[AMBER] Installation error on cray machine
- Daniel Roe (Fri Jan 11 2019 - 17:06:31 PST)
- Sundar (Fri Jan 11 2019 - 09:34:38 PST)
- Daniel Roe (Fri Jan 11 2019 - 05:52:16 PST)
- Sundar (Thu Jan 10 2019 - 12:23:58 PST)
[AMBER] Interpreting MM-(GB)PBSA results
- Wesley Michael Botello-Smith (Wed Jan 30 2019 - 10:41:07 PST)
- Sundar (Wed Jan 30 2019 - 10:22:22 PST)
- Josh Berryman (Mon Jan 28 2019 - 07:53:15 PST)
- David A Case (Mon Jan 28 2019 - 04:54:33 PST)
- Sundar (Sat Jan 26 2019 - 17:43:57 PST)
[AMBER] Introduction to dummy atoms needed
- Pengfei Li (Fri Jan 25 2019 - 08:31:19 PST)
- Emmett Leddin (Wed Jan 16 2019 - 09:39:14 PST)
- Markowska (Wed Jan 16 2019 - 09:30:54 PST)
[AMBER] LIE calculation in FEW workflow
- Debarati DasGupta (Thu Jan 17 2019 - 12:46:36 PST)
[AMBER] Lifetime structural waters CPPTRAJ error
- Daniel Roe (Thu Jan 24 2019 - 07:45:05 PST)
- Pedro Miguel Reis Figueiredo (Thu Jan 24 2019 - 04:24:10 PST)
[AMBER] lipidscd S.D.
- Stephan Schott (Tue Jan 29 2019 - 08:21:42 PST)
- Daniel Roe (Mon Jan 28 2019 - 11:57:29 PST)
- Stephan Schott (Mon Jan 28 2019 - 09:26:24 PST)
- Daniel Roe (Mon Jan 28 2019 - 08:53:42 PST)
- Daniel Roe (Tue Jan 22 2019 - 16:19:50 PST)
- Stephan Schott (Tue Jan 22 2019 - 06:44:27 PST)
[AMBER] Literature about magnesium ion parameters in tutorial A8
- Mauricio Esguerra (Fri Jan 04 2019 - 03:00:17 PST)
- Zuo, Zhicheng (Thu Jan 03 2019 - 12:19:03 PST)
[AMBER] makeDIST_RST
- Sundar (Wed Jan 09 2019 - 12:13:16 PST)
- David A Case (Wed Jan 09 2019 - 05:45:28 PST)
- Sundar (Tue Jan 08 2019 - 13:51:54 PST)
[AMBER] MCPB.py Error
- Dylan Novack (Wed Jan 30 2019 - 07:29:55 PST)
- Pengfei Li (Fri Jan 25 2019 - 08:23:27 PST)
- Dylan Novack (Tue Jan 22 2019 - 16:53:40 PST)
[AMBER] MCPB.py error with HEME containing protein
- Prasanth G, Research Scholar (Sun Jan 27 2019 - 03:06:44 PST)
- Pengfei Li (Fri Jan 25 2019 - 08:21:16 PST)
[AMBER] MCPB.py Modelling Question
- Pengfei Li (Thu Jan 10 2019 - 07:35:29 PST)
[AMBER] MCPB.py problem
- 高含露 (Mon Jan 21 2019 - 04:49:25 PST)
- Pengfei Li (Sat Jan 19 2019 - 08:30:39 PST)
- gaohanlu (Wed Jan 16 2019 - 17:46:53 PST)
[AMBER] MD with different velocities.
- David A Case (Mon Jan 21 2019 - 06:01:23 PST)
- Rinsha Chk (Mon Jan 21 2019 - 04:47:51 PST)
[AMBER] Metal center molecule
- Pengfei Li (Sat Jan 19 2019 - 08:28:55 PST)
- 高含露 (Tue Jan 15 2019 - 19:41:47 PST)
- Saikat Pal (Tue Jan 15 2019 - 05:24:23 PST)
- gaohanlu (Mon Jan 14 2019 - 19:22:02 PST)
[AMBER] MMPBSA.py error
- Pratul Agarwal (Fri Jan 04 2019 - 06:28:09 PST)
[AMBER] MMPBSA.py- bad atom type "I"
- Subha Kalyaanamoorthy (Thu Jan 10 2019 - 11:20:33 PST)
[AMBER] Modifying mdread2.F90 for bad atom type: "I" MMPBSA error
- Subha Kalyaanamoorthy (Fri Jan 11 2019 - 10:29:45 PST)
[AMBER] mutation using pdb4amber
- Hai Nguyen (Mon Jan 14 2019 - 16:26:29 PST)
- Sundar (Mon Jan 14 2019 - 10:51:36 PST)
[AMBER] NMOD is not running for MM PBSA
- David A Case (Fri Jan 25 2019 - 04:56:15 PST)
- Santanu Santra (Thu Jan 24 2019 - 23:20:12 PST)
[AMBER] NO and CO parameters from Antechamber
- David A Case (Fri Jan 11 2019 - 05:49:50 PST)
- Markowska (Thu Jan 10 2019 - 13:17:06 PST)
[AMBER] Obtaining necessary *.top for MMPBSA.py
- Elvis Martis (Mon Dec 31 2018 - 21:05:54 PST)
[AMBER] orca failure in mdgx: QM grid file not found
- Anthony Bogetti (Tue Jan 01 2019 - 18:10:04 PST)
[AMBER] PCA Analyze mode evec.pev
- Daniel Roe (Thu Jan 24 2019 - 08:28:44 PST)
- Shirin Jamshidi (Tue Jan 22 2019 - 03:01:25 PST)
[AMBER] pmemd18 mpi installation error
- Kateryna Miroshnychenko (Mon Jan 21 2019 - 13:38:17 PST)
- David Case (Sat Jan 19 2019 - 06:26:20 PST)
- Kateryna Miroshnychenko (Fri Jan 18 2019 - 13:38:18 PST)
[AMBER] Post to amber mailing list
- Debarati DasGupta (Thu Jan 17 2019 - 12:31:31 PST)
[AMBER] Printing distance values to a file
- Sundar (Wed Jan 16 2019 - 07:29:52 PST)
- David A Case (Wed Jan 16 2019 - 07:17:44 PST)
- Sundar (Tue Jan 15 2019 - 14:18:29 PST)
[AMBER] Problem regarding RMSD
- Saikat Pal (Thu Jan 31 2019 - 06:54:44 PST)
- Saikat Pal (Thu Jan 31 2019 - 06:50:03 PST)
[AMBER] Problem with AMP atom separating in equilibration
- David A Case (Tue Jan 08 2019 - 06:01:02 PST)
- Kasprzak, Wojciech (NIH/NCI) [C] (Mon Jan 07 2019 - 13:13:57 PST)
[AMBER] Problems with cutoff (?)
- David Case (Sat Jan 12 2019 - 13:45:47 PST)
- Margarita I. Bernal-Uruchurtu (Fri Jan 11 2019 - 01:48:21 PST)
[AMBER] Program received signal SIGSEGV: Segmentation fault - invalid memory reference.
- David A Case (Mon Jan 28 2019 - 04:59:18 PST)
- Qinghua Liao (Fri Jan 25 2019 - 04:46:20 PST)
[AMBER] pytraj Error: No reference set, cannot select by distance.
- Hai Nguyen (Fri Jan 18 2019 - 12:38:44 PST)
- Thomas Evangelidis (Thu Jan 17 2019 - 07:48:46 PST)
[AMBER] pytraj native contacts
- Daniel Roe (Thu Jan 24 2019 - 07:55:04 PST)
- Wesley Michael Botello-Smith (Wed Jan 23 2019 - 10:35:02 PST)
- Hai Nguyen (Wed Jan 23 2019 - 08:31:44 PST)
- Rosellen, Martin (Wed Jan 23 2019 - 07:55:34 PST)
[AMBER] pytraj time
- Shayna Hilburg (Thu Jan 31 2019 - 12:48:29 PST)
- Daniel Roe (Thu Jan 31 2019 - 12:32:17 PST)
- Shayna Hilburg (Thu Jan 31 2019 - 11:44:26 PST)
[AMBER] QM/MM dynamics: metal oxides
- emanuele (Sun Jan 27 2019 - 03:43:17 PST)
- David Case (Sat Jan 26 2019 - 07:18:27 PST)
- emanuele falbo (Fri Jan 25 2019 - 12:57:23 PST)
- emanuele falbo (Fri Jan 25 2019 - 09:03:49 PST)
[AMBER] QM/MM-GBSA results
- Sundar (Sat Jan 05 2019 - 14:21:55 PST)
[AMBER] questions on VDW parameters
- David A Case (Fri Jan 25 2019 - 07:56:52 PST)
- Qinghua Liao (Fri Jan 25 2019 - 03:06:02 PST)
[AMBER] recovering amber binaries
- Daniel Roe (Tue Jan 22 2019 - 16:28:54 PST)
- Andreas Tosstorff (Tue Jan 22 2019 - 06:56:31 PST)
- Pratul Agarwal (Tue Jan 22 2019 - 05:41:03 PST)
- Gustaf Olsson (Tue Jan 22 2019 - 05:20:54 PST)
- Andreas Tosstorff (Tue Jan 22 2019 - 04:12:17 PST)
[AMBER] regarding change in time
- David A Case (Mon Jan 21 2019 - 05:54:52 PST)
- Charu Sharma (JRF) (Mon Jan 21 2019 - 00:36:19 PST)
[AMBER] reweighting aMD
- Núbia Prates (Fri Jan 11 2019 - 04:17:43 PST)
[AMBER] RMSD of independent trajectories using cpptraj
- Hunter Wilson (Tue Jan 15 2019 - 12:09:20 PST)
- Daniel Roe (Tue Jan 15 2019 - 06:27:50 PST)
- Hunter Wilson (Tue Jan 15 2019 - 05:51:24 PST)
- Daniel Roe (Mon Jan 14 2019 - 16:41:58 PST)
- Hunter Wilson (Mon Jan 14 2019 - 13:24:30 PST)
[AMBER] RMSF in amber
- Elvis Martis (Mon Jan 07 2019 - 20:46:36 PST)
- Daniel Roe (Mon Jan 07 2019 - 07:31:05 PST)
- Elvis Martis (Sun Jan 06 2019 - 03:01:49 PST)
- Akshay Prabhakant (Sun Jan 06 2019 - 01:23:41 PST)
[AMBER] Separate work values for each restraint in SMD
- Sundar (Wed Jan 16 2019 - 07:38:30 PST)
- Adrian Roitberg (Wed Jan 16 2019 - 07:15:05 PST)
- Sundar (Wed Jan 16 2019 - 07:10:17 PST)
[AMBER] Set the correct number of CPUs and GPU - benchmark - Amber 14
- Ross Walker (Wed Jan 30 2019 - 07:33:17 PST)
- Eduardo Almeida Costa (Tue Jan 29 2019 - 10:34:02 PST)
[AMBER] Si and Al parameters
- Sundar (Sat Jan 05 2019 - 14:17:44 PST)
[AMBER] simple minimization error of a acetonitrile molecule in water (TIP3P water)
- David Case (Tue Jan 29 2019 - 18:10:52 PST)
- David A Case (Mon Jan 28 2019 - 04:57:05 PST)
- Bill Ross (Fri Jan 25 2019 - 14:59:33 PST)
- Debarati DasGupta (Fri Jan 25 2019 - 11:54:12 PST)
- Bill Ross (Fri Jan 25 2019 - 09:35:43 PST)
- Bill Ross (Fri Jan 25 2019 - 08:31:11 PST)
- Debarati DasGupta (Fri Jan 25 2019 - 08:00:31 PST)
[AMBER] Simulation setup for LIE
- Bill Ross (Thu Jan 24 2019 - 13:08:21 PST)
- Bill Ross (Thu Jan 24 2019 - 12:23:19 PST)
- Debarati DasGupta (Thu Jan 24 2019 - 11:27:04 PST)
[AMBER] simulation with glycans
- Sundar (Wed Jan 16 2019 - 07:14:33 PST)
- Jacopo Sgrignani (Wed Jan 16 2019 - 02:47:44 PST)
[AMBER] steered md at constant force
- Jason Swails (Thu Jan 10 2019 - 13:23:13 PST)
- Batuhan Kav (Wed Jan 09 2019 - 03:00:56 PST)
[AMBER] Suggestions on MM-(GB)PBSA
- Sundar (Mon Jan 21 2019 - 23:20:56 PST)
[AMBER] Testing AMBER16 installation in parallel; possible bug in testing scripts
- Bellesis, Andrew G (Thu Jan 03 2019 - 08:26:19 PST)
[AMBER] time-dependent distance restraints
- David A Case (Fri Jan 18 2019 - 05:51:47 PST)
- Sundar (Thu Jan 17 2019 - 08:07:47 PST)
[AMBER] TMD and pmemd
- Wesley Michael Botello-Smith (Wed Jan 09 2019 - 12:25:43 PST)
- Sundar (Wed Jan 09 2019 - 12:15:06 PST)
[AMBER] TMD reporting force profile
- Sundar (Fri Jan 11 2019 - 08:04:40 PST)
[AMBER] Understanding Distance Restraint
- Stephan Schott (Thu Jan 03 2019 - 02:21:54 PST)
- Charles Lin (Wed Jan 02 2019 - 08:43:04 PST)
- Ara R (Wed Jan 02 2019 - 06:19:54 PST)
[AMBER] Unnatural nucleic acid in DNA chain
- David A Case (Fri Jan 25 2019 - 04:53:26 PST)
- Bill Ross (Thu Jan 24 2019 - 13:15:04 PST)
- Anthony Bogetti (Thu Jan 24 2019 - 12:52:19 PST)
[AMBER] Unusual separation between protein and ligand
- Stephan Schott (Sat Jan 26 2019 - 11:41:30 PST)
- Rajarshi Roy (Sat Jan 26 2019 - 10:22:44 PST)
- ABEL Stephane (Sat Jan 26 2019 - 04:36:28 PST)
- Rajarshi Roy (Fri Jan 25 2019 - 23:11:34 PST)
[AMBER] Using Distance Restraints in TMD
- Aravind R (Tue Jan 22 2019 - 00:30:25 PST)
- Aravind R (Mon Jan 14 2019 - 06:40:13 PST)
[AMBER] Virtual Spin Labels in Amber
- David Case (Sat Jan 12 2019 - 14:00:57 PST)
- Kari Gaalswyk (Thu Jan 10 2019 - 07:56:30 PST)
[AMBER] Water bridge analysis using cpptraj (hbond)
- Abhilash J (Fri Jan 18 2019 - 06:04:06 PST)
[AMBER] Xplor file generation
- Daniel Roe (Thu Jan 24 2019 - 08:08:38 PST)
- Debarati DasGupta (Fri Jan 18 2019 - 07:47:28 PST)
[AMBER] Zeolite simulations
- Pengfei Li (Fri Jan 25 2019 - 08:34:30 PST)
- David A Case (Fri Jan 25 2019 - 07:59:49 PST)
- Sundar (Sat Jan 19 2019 - 19:54:38 PST)
- Pengfei Li (Sat Jan 19 2019 - 13:56:28 PST)
- Sundar (Mon Jan 14 2019 - 06:42:09 PST)
- Pengfei Li (Thu Jan 10 2019 - 07:45:45 PST)
- Sundar (Thu Jan 03 2019 - 21:06:06 PST)

Amber Archive Jan 2019 by subject