hi
could anyone explain me about "Frames" in md simulation?what is meant by
Frames in md simulation.
Best regards
On Wed, Jan 9, 2019 at 5:46 PM Qinghua Liao <scorpio.liao.gmail.com> wrote:
> Hello,
>
> Before you load your trajectories, you can remove waters and ions from
> the trajectories,
> or you don't need to load every frame, but load every XXX (for example,
> 10) frames.
>
>
> All the best,
> Qinghua
>
> On 1/9/19 1:22 PM, Chetna Tyagi wrote:
> > Dear all,
> >
> > This is not specifically an AMBER question but I would like to ask how
> can
> > we visualize large trajectories?
> >
> > I carried out three separate accelerated MD runs of 500 ns each. I want
> to
> > see how my peptide eventually interacts with the lipid bilayer.
> > When I load it in VMD for visualization, the program just stops with an
> > error like "Can't load any more frames".
> >
> > Is it a problem with VMD or that my computer's memory (16 GB) is
> > insufficient? I could not find similar errors on VMD help forums.
> >
> > What are some other software or tools to visualize this? How did you
> solve
> > this problem?
> > Thank you for any suggestions..
>
>
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Received on Wed Jan 09 2019 - 05:00:03 PST
