To Whom It May Concern,
I have some problem on Amber18 installation. When I compile with
"./configure intel" for serial CPU installation, I get some error with
icc -c -Dflex -ip -O3 -std=gnu99 -xHost -fPIC -D_FILE_OFFSET_BITS=64
-D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ -DHASBZ2 -D__PLUMED_HAS_DLOPEN
-I/share/opt/intel/compilers_and_libraries_2019.0.117/linux/mkl/include
-DRISMSFF -I/apps/amber18_intel/include -o rand2.o rand2.c
nblist.c(883): warning #3180: unrecognized OpenMP #pragma
#pragma omp parallel reduction (+: totpair) \
^
": internal error: ** The compiler has encountered an unexpected problem.
** Segmentation violation signal raised. **
Access violation or stack overflow. Please contact Intel Support for
assistance.
compilation aborted for nblist.c (code 4)
make[2]: *** [nblist.o] Error 4
make[2]: *** Waiting for unfinished jobs....
make[2]: Leaving directory `/share/apps/amber18_intel/AmberTools/src/sff'
make[1]: *** [serial] Error 2
make[1]: Leaving directory `/share/apps/amber18_intel/AmberTools/src'
make: *** [install] Error 2
However, I can install with "./configure -cuda -mpi intel" and "./configure
-mpi intel".
How to solve this problem?
Thanks
--
*Bundit Boonyarit*
- PhD student in Information Science and Technology (IST)
Vidyasirimedhi Institute of Science and Technology (VISTEC)
555 Moo 1, Pa Yup Nai, Wang Chan, Rayong 21210, Thailand
- Director of Social Services and Board Directors, The White Room
Enterprise Co., Ltd., Thailand
*Email:* *bundit.b_s18.vistec.ac.th <bundit.b_s18.vistec.ac.th>*
*Website:* https://manbaritone.com
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Received on Fri Jan 25 2019 - 13:00:02 PST
