Hi Karolina,
This tutorial may be helpful: https://www.mayo.edu/research/labs/computer-aided-molecular-design/projects/zinc-protein-simulations-using-cationic-dummy-atom-cada-approach <https://www.mayo.edu/research/labs/computer-aided-molecular-design/projects/zinc-protein-simulations-using-cationic-dummy-atom-cada-approach>.
Hope it helps,
Pengfei
> On Jan 16, 2019, at 12:30 PM, Karolina Mitusińska (Markowska) <markowska.kar.gmail.com> wrote:
>
> Dear Amber Users and Developers,
>
> is there a tutorial explaining how to work with dummy atoms?
> Or maybe someone on the list have some experience with dummy atoms and
> could share here?
>
> I'll really appreciate some help.
> With regards,
> Karolina Mitusińska
> PhD student
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Received on Fri Jan 25 2019 - 09:00:02 PST
