[AMBER] simulation with glycans

From: Jacopo Sgrignani <sgrigna.gmail.com>
Date: Wed, 16 Jan 2019 11:47:44 +0100

Dear all
could anybody help me to understand how to run a simulation with pmemd
generating the input file with this charmm tool (
www.charmm-gui.org/?doc=input/glycan) for a protein that include glycans.
I generated some files with glycan reader and modeller, and I thought to
convert these using chamber. However, I'm not sure about which are the
files to convert or if I have to use these to produce other files (with
water for example) and then convert these new files with chamber.

thanks in advance

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Received on Wed Jan 16 2019 - 03:00:03 PST
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