Hi Daniel,
My configure argument was './configure gnu'
And yes it checks libbz2 OK. The only warning was with 'boost', which I
ignoreed.
NetCDF build succeeded.
Checking for zlib: OK
Checking for libbz2: OK
Testing the CC compiler with boost:
CC -fPIC testp.cpp -lboost_thread -lboost_system -o testp
Warning: Could not link to boost. Ensure boost-thread, boost-system and
boost headers are installed.
Warning: Failed command:
CC -fPIC -lboost_thread -lboost_system -o testp testp.cpp
Warning: Check boost.compile.err for error details.
Warning: Memembed functionality in packmol_memgen not available.
Configuring fftw-3.3 (may be time-consuming)...
fftw-3.3 configure succeeded.
Configuring XBLAS (may be time-consuming)...
XBLAS configure succeeded.
Configuring CPPTRAJ...complete.
The configuration file, config.h, was successfully created.
Thanks,
Jubilant
On Fri, Jan 11, 2019 at 7:52 AM Daniel Roe <daniel.r.roe.gmail.com> wrote:
> Hi,
>
> What were the arguments you gave to 'configure'? There is a check for
> libbz2 during configure, did it say OK?
>
> -Dan
>
> On Thu, Jan 10, 2019 at 3:24 PM Sundar <jubilantsundar.gmail.com> wrote:
> >
> > Following error occurred while installing the serial version on a CRAY
> > supercomputer.
> > Any help on troubleshooting
> >
> > $ make install
> > .
> > .
> > .
> > /usr/bin/ld: cannot find -lbz2
> > collect2: error: ld returned 1 exit status
> > Makefile:25: recipe for target 'cpptraj' failed
> > make[4]: *** [cpptraj] Error 1
> > make[4]: Leaving directory
> > '/p/home/tools/amber18/AmberTools/src/cpptraj/src'
> > Makefile:10: recipe for target 'install' failed
> > make[3]: *** [install] Error 2
> > make[3]: Leaving directory '/p/home/tools/amber18/AmberTools/src/cpptraj'
> > Makefile:482: recipe for target 'build_cpptraj' failed
> > make[2]: *** [build_cpptraj] Error 2
> > make[2]: Leaving directory '/p/home/tools/amber18/AmberTools/src'
> > Makefile:27: recipe for target 'serial' failed
> > make[1]: *** [serial] Error 2
> > make[1]: Leaving directory '/p/home/tools/amber18/AmberTools/src'
> > Makefile:7: recipe for target 'install' failed
> > make: *** [install] Error 2
> >
> > I made sure the bzip2 is in my path.
> >
> > --
> > Thanks,
> > Jubilant
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Thanks,
Sundar Thangapandian
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Jan 11 2019 - 10:00:03 PST
