Re: [AMBER] Literature about magnesium ion parameters in tutorial A8

From: Zuo, Zhicheng <>
Date: Thu, 3 Jan 2019 20:19:03 +0000

Hi Ning:

In preparing your force field file with leap, the default Mg2+ ion parameter set points to the "normal usage set" by Li, Merz, et al for the current AMBER version,

if you do not explicitly specify. You may refer to Table 1 in our recent paper for a summary of commonly used Mg2+ models.

All the best,


From: ? ? <>
Sent: Thursday, January 3, 2019 10:01:15 AM
Subject: [AMBER] Literature about magnesium ion parameters in tutorial A8

Dear all,

I used the magnesium ion parameter in Amber tutorial A8 (;;sdata=6iQoKM%2Bsy%2FJG9l%2FB%2BgHkeZoz3FZ0Nbt1Fd%2BUhrDubOc%3D&amp;reserved=0) in my work. And I want to cite the source of this parameter or any literatures used this parameter as reference.
After searching, I did not find appropriate literature (some used other magnesium parameters, the others did not introduce clearly). Could anyone tell me any literatures used this parameter?

Thanks a lot!

Best wishes,
Shanghai jiaotong University
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Received on Thu Jan 03 2019 - 12:30:02 PST
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