Amber Archive Feb 2009 by author
476 messages
:
Starting
Sun Feb 01 2009 - 01:22:48 PST,
Ending
Sun Mar 01 2009 - 01:09:59 PST
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RE: [AMBER] DM complexation
(Tue Feb 17 2009 - 07:36:01 PST)
[AMBER] DM complexation
(Tue Feb 17 2009 - 07:10:49 PST)
[AMBER] Resp charge
(Fri Feb 06 2009 - 09:34:12 PST)
[AMBER] out error
(Tue Feb 03 2009 - 10:58:46 PST)
ABEL Stephane 175950
RE : [AMBER] RED-vIII: Scratch directory for Gaussian [NOT FOUND]
(Tue Feb 10 2009 - 06:39:17 PST)
RE : [AMBER] script to convert GLYCAM ff in CHARMM format
(Fri Feb 06 2009 - 07:03:19 PST)
[AMBER] script to convert GLYCAM ff in CHARMM format
(Fri Feb 06 2009 - 06:39:04 PST)
Adrian Roitberg
Re: [AMBER] Problem with NVT and NPT
(Fri Feb 20 2009 - 05:14:23 PST)
Re: [AMBER] IG not change at each restart of NPT simulation
(Wed Feb 18 2009 - 06:46:36 PST)
Re: [AMBER] Need suggestion on payment for Ph.D student majored in molecular simulation
(Tue Feb 17 2009 - 10:57:56 PST)
Re: [AMBER] density and volume in NVT ensamble
(Fri Feb 06 2009 - 06:31:24 PST)
Re: [AMBER] Any link to a major QM code?
(Sun Feb 15 2009 - 18:59:01 PST)
Re: [AMBER] non bonded parameteters index
(Thu Feb 12 2009 - 16:15:33 PST)
Re: [AMBER] Stability of a long NPT md trajectory?
(Mon Feb 09 2009 - 17:03:45 PST)
Re: [AMBER] second derivative matrix
(Mon Feb 09 2009 - 06:29:51 PST)
Re: [AMBER] DFT SK parameter for P atom
(Mon Feb 02 2009 - 12:24:00 PST)
Re: [AMBER] precision in the trajectory files
(Mon Feb 02 2009 - 06:46:49 PST)
Adrien Delmont
[AMBER] problem about trajectory analysis
(Wed Feb 25 2009 - 06:24:41 PST)
[AMBER] install Amber 10 to Macbook
(Sat Feb 14 2009 - 03:06:50 PST)
Akansha Saxena
[AMBER] New atom type with 7 bonds
(Fri Feb 13 2009 - 15:56:47 PST)
Alessandro Nascimento
Re: [AMBER] non bonded parameteters index
(Thu Feb 12 2009 - 16:14:44 PST)
Alexander Schierholt
[AMBER] Micelles set-up??
(Tue Feb 03 2009 - 02:09:52 PST)
amit jain
[AMBER] AMBER: chiral restraint on protein
(Tue Feb 10 2009 - 16:48:12 PST)
Andrew Olson
[AMBER] (no subject)
(Thu Feb 19 2009 - 11:46:24 PST)
[AMBER] linux install problem
(Thu Feb 19 2009 - 10:44:14 PST)
[AMBER] ./configure_amber: line 1211: cd: netcdf/src: No such file or directory
(Wed Feb 18 2009 - 09:08:57 PST)
Andrew Purkiss-Trew
Re: [AMBER] density and volume in NVT ensamble
(Mon Feb 16 2009 - 06:45:25 PST)
Re: [AMBER] density and volume in NVT ensamble
(Mon Feb 16 2009 - 06:14:40 PST)
Re: [AMBER] parameter files for D-amino acid
(Thu Feb 05 2009 - 07:02:25 PST)
aneesh cna
[AMBER] hbond analysis
(Mon Feb 09 2009 - 09:55:25 PST)
[AMBER] strip frames from crd file
(Mon Feb 02 2009 - 01:35:11 PST)
[AMBER] strip frames from crd file
(Mon Feb 02 2009 - 01:33:16 PST)
Anselm Horn
Re: [AMBER] Error running sander.MPI
(Tue Feb 17 2009 - 02:28:47 PST)
Antonios Samiotakis
[AMBER] Question about improper torsions...
(Fri Feb 13 2009 - 14:57:03 PST)
[AMBER] Langevin dynamics
(Mon Feb 02 2009 - 09:54:31 PST)
Arnaud
[AMBER] PMF calculation
(Tue Feb 17 2009 - 10:10:18 PST)
Astrid Maaß
[AMBER] extra torsion terms in tleap.top-file
(Thu Feb 26 2009 - 06:32:30 PST)
Atro Tossavainen
Re: [AMBER] error in executing sander.MPI in amber9
(Thu Feb 05 2009 - 03:08:59 PST)
Re: [AMBER] Test run on Solaris 10 X 86
(Wed Feb 04 2009 - 23:50:12 PST)
Re: [AMBER] Test run on Solaris 10 X 86
(Wed Feb 04 2009 - 04:33:25 PST)
Re: [AMBER] Test run on Solaris 10 X 86
(Mon Feb 02 2009 - 15:06:49 PST)
Re: [AMBER] Test run on Solaris 10 X 86
(Sat Jan 31 2009 - 23:10:30 PST)
Aydin, Cihan
[AMBER] Citing AMBER Tools...
(Sat Jan 31 2009 - 21:08:36 PST)
Bala subramanian
Re: [AMBER] using Gromacs for analysis
(Fri Feb 27 2009 - 10:16:46 PST)
Re: [AMBER] hbond analysis
(Mon Feb 09 2009 - 10:33:39 PST)
balaji nagarajan
RE: [AMBER] reg.targeted molecular dynamics
(Fri Feb 27 2009 - 02:28:02 PST)
RE: [AMBER] reg.targeted molecular dynamics
(Wed Feb 25 2009 - 01:34:57 PST)
RE: [AMBER] reg.targeted molecular dynamics
(Wed Feb 25 2009 - 01:18:10 PST)
RE: [AMBER] reg.targeted molecular dynamics
(Sun Feb 22 2009 - 22:45:18 PST)
RE: [AMBER] reg.targeted molecular dynamics
(Sun Feb 22 2009 - 06:45:29 PST)
[AMBER] reg.targeted molecular dynamics
(Fri Feb 20 2009 - 21:10:50 PST)
RE: [AMBER] reg.Targeted molecular dynamics
(Wed Feb 18 2009 - 06:07:09 PST)
[AMBER] reg.Targeted molecular dynamics
(Tue Feb 17 2009 - 21:26:49 PST)
[AMBER] parallel run error
(Tue Feb 17 2009 - 00:19:23 PST)
[AMBER] reg . run TMD
(Tue Feb 10 2009 - 09:36:28 PST)
Barbault Florent
Re: [AMBER] glycam and solvateoct command
(Tue Feb 17 2009 - 12:13:58 PST)
Re: [AMBER] Beginner question
(Fri Feb 13 2009 - 13:25:13 PST)
Beale, John
[AMBER] H-Bonds
(Thu Feb 26 2009 - 06:38:04 PST)
[AMBER] ptraj analyze
(Wed Feb 25 2009 - 08:56:59 PST)
[AMBER] (no subject)
(Tue Feb 24 2009 - 03:59:51 PST)
[AMBER] secstruct
(Thu Feb 19 2009 - 05:22:20 PST)
[AMBER] (no subject)
(Tue Feb 17 2009 - 05:02:25 PST)
[AMBER] H-bond information
(Thu Feb 12 2009 - 07:32:30 PST)
[AMBER] Radius of Gyration
(Mon Feb 02 2009 - 09:34:35 PST)
ben rodriguez
[AMBER] Amber 9 Install - AMBERBUILDFLAGS error
(Mon Feb 16 2009 - 19:39:14 PST)
[AMBER] Normal errors on job kill?
(Mon Feb 16 2009 - 18:35:43 PST)
Bill K
Re: [AMBER] Stability of a long NPT md trajectory?
(Tue Feb 10 2009 - 11:39:22 PST)
Re: [AMBER] Stability of a long NPT md trajectory?
(Mon Feb 09 2009 - 23:37:31 PST)
Re: [AMBER] Stability of a long NPT md trajectory?
(Mon Feb 09 2009 - 12:56:53 PST)
[AMBER] Stability of a long NPT md trajectory?
(Sun Feb 08 2009 - 23:07:24 PST)
Bill Kowallis
[AMBER] Re: AMBER: How do you evaluate forces on a fixed atom?
(Wed Feb 18 2009 - 17:55:47 PST)
Bill Ross
RE: [AMBER] Compiling Carnal Amber7 in Amber9
(Thu Feb 12 2009 - 12:32:29 PST)
RE: [AMBER] Compiling Carnal Amber7 in Amber9
(Wed Feb 11 2009 - 11:04:53 PST)
Re: [AMBER] Irregularity in box during md
(Tue Feb 10 2009 - 09:24:12 PST)
Re: [AMBER] extract frames from a .mdcrd
(Fri Feb 06 2009 - 11:13:27 PST)
Re: [AMBER] production run terminates due to (*) symbols in xxx.rst
(Thu Feb 05 2009 - 09:42:55 PST)
Re: [AMBER] Compiling Carnal Amber7 in Amber9
(Thu Feb 05 2009 - 09:36:00 PST)
Carlos P Sosa
Re: [AMBER] pmemd on BlueGene/P?
(Thu Feb 05 2009 - 12:48:57 PST)
Carlos Simmerling
Re: [AMBER] Simulated annealing
(Thu Feb 26 2009 - 08:27:04 PST)
Re: [AMBER] (no subject)
(Thu Feb 26 2009 - 08:24:40 PST)
Re: [AMBER] Simulated annealing
(Thu Feb 26 2009 - 07:55:41 PST)
Re: [AMBER] Simulated annealing
(Wed Feb 25 2009 - 17:31:30 PST)
Re: [AMBER] problem with amber installation
(Wed Feb 25 2009 - 03:25:34 PST)
Re: [AMBER] reg.targeted molecular dynamics
(Wed Feb 25 2009 - 03:21:39 PST)
Re: [AMBER] Equilibration Scaling to System Size
(Tue Feb 24 2009 - 14:49:10 PST)
Re: [AMBER] problem with amber installation
(Tue Feb 24 2009 - 03:47:20 PST)
Re: [AMBER] PME doesn't work
(Mon Feb 23 2009 - 04:08:07 PST)
Re: [AMBER] PME doesn't work
(Mon Feb 23 2009 - 03:19:27 PST)
Re: [AMBER] reg.targeted molecular dynamics
(Mon Feb 23 2009 - 03:16:00 PST)
Re: [AMBER] reg.targeted molecular dynamics
(Sun Feb 22 2009 - 07:06:32 PST)
Re: [AMBER] A beginner's question for using AMBER to do cell membrane simulation and molecular transportation
(Sat Feb 21 2009 - 13:33:31 PST)
Re: [AMBER] reg.targeted molecular dynamics
(Sat Feb 21 2009 - 04:35:05 PST)
[AMBER] ACS computational chemistry awards - March 9th deadline
(Fri Feb 20 2009 - 08:27:18 PST)
Re: [AMBER] Problem with NVT and NPT
(Fri Feb 20 2009 - 05:30:26 PST)
Re: Re: [AMBER] dipole correlation function
(Thu Feb 19 2009 - 09:23:03 PST)
Re: [AMBER] secstruct
(Thu Feb 19 2009 - 06:45:47 PST)
Re: [AMBER] dipole correlation function
(Thu Feb 19 2009 - 06:39:16 PST)
Re: [AMBER] secstruct
(Thu Feb 19 2009 - 05:30:16 PST)
Re: [AMBER] distance matrix plot and secondary structure analysis
(Thu Feb 19 2009 - 04:48:57 PST)
Re: [AMBER] How to constrain the hydrogen bonding distances...
(Wed Feb 18 2009 - 06:25:47 PST)
Re: [AMBER] IG not change at each restart of NPT simulation
(Wed Feb 18 2009 - 06:04:47 PST)
Re: Re: [AMBER] MD simulation with a partially flexible system
(Wed Feb 18 2009 - 04:35:40 PST)
Re: [AMBER] NVT vs NPT
(Wed Feb 18 2009 - 04:18:49 PST)
Re: [AMBER] protein monomerizartion times and simulation with implicit solvent
(Wed Feb 18 2009 - 04:16:00 PST)
Re: [AMBER] DM complexation
(Tue Feb 17 2009 - 07:59:15 PST)
Re: [AMBER] DM complexation
(Tue Feb 17 2009 - 07:28:34 PST)
Re: [AMBER] MD simulation with a partially flexible system
(Tue Feb 17 2009 - 06:45:33 PST)
Re: [AMBER] using ptraj
(Tue Feb 17 2009 - 06:29:07 PST)
Re: [AMBER] using ptraj
(Tue Feb 17 2009 - 05:34:33 PST)
Re: [AMBER] (no subject)
(Tue Feb 17 2009 - 05:10:49 PST)
Re: [AMBER] parallel run error
(Tue Feb 17 2009 - 04:40:03 PST)
Re: [AMBER] using ptraj
(Tue Feb 17 2009 - 04:37:15 PST)
Re: [AMBER] using ptraj
(Mon Feb 16 2009 - 12:41:54 PST)
Re: [AMBER] density and volume in NVT ensamble
(Mon Feb 16 2009 - 06:30:02 PST)
Re: [AMBER] density and volume in NVT ensamble
(Mon Feb 16 2009 - 06:04:22 PST)
Re: [AMBER] Error running sander.MPI
(Mon Feb 16 2009 - 03:51:08 PST)
Re: [AMBER] Beginner question
(Fri Feb 13 2009 - 13:24:37 PST)
Re: [AMBER] array out of bound in Amber10 tests
(Fri Feb 13 2009 - 08:38:04 PST)
Re: [AMBER] atoms fly out of the box in NVT calculations
(Thu Feb 12 2009 - 14:05:10 PST)
Re: [AMBER] Optimization problem
(Thu Feb 12 2009 - 06:21:28 PST)
Re: [AMBER] array out of bound in Amber10 tests
(Wed Feb 11 2009 - 08:14:49 PST)
Re: [AMBER] Chlorine containing molecule
(Wed Feb 11 2009 - 05:48:27 PST)
Re: [AMBER] reg . run TMD
(Tue Feb 10 2009 - 09:48:22 PST)
Re: [AMBER] the output files
(Tue Feb 10 2009 - 06:18:34 PST)
Re: [AMBER] the output files
(Tue Feb 10 2009 - 03:22:04 PST)
Re: [AMBER] extract frames from a .mdcrd
(Tue Feb 10 2009 - 02:58:12 PST)
Re: [AMBER] Irregularity in box during md
(Tue Feb 10 2009 - 02:57:02 PST)
Re: [AMBER] Stability of a long NPT md trajectory?
(Mon Feb 09 2009 - 19:10:55 PST)
Re: [AMBER] Stability of a long NPT md trajectory?
(Mon Feb 09 2009 - 16:56:50 PST)
Re: [AMBER] hbond analysis
(Mon Feb 09 2009 - 10:52:14 PST)
Re: [AMBER] the output files
(Mon Feb 09 2009 - 05:06:41 PST)
Re: [AMBER] Stability of a long NPT md trajectory?
(Mon Feb 09 2009 - 04:08:29 PST)
Re: [AMBER] extract frames from a .mdcrd
(Fri Feb 06 2009 - 03:12:00 PST)
Re: [AMBER] parameter files for D-amino acid
(Thu Feb 05 2009 - 07:10:18 PST)
Re: [AMBER] parameter files for D-amino acid
(Thu Feb 05 2009 - 07:06:09 PST)
Re: [AMBER] parameter files for D-amino acid
(Thu Feb 05 2009 - 05:37:32 PST)
Re: [AMBER] Solvation potential and free energies
(Thu Feb 05 2009 - 04:33:08 PST)
Re: [AMBER] How to build reference coordinate file for targeted MD
(Thu Feb 05 2009 - 03:19:12 PST)
Re: [AMBER] compiling errors
(Wed Feb 04 2009 - 16:35:28 PST)
Re: [AMBER] PDB of a specific frame
(Wed Feb 04 2009 - 11:52:49 PST)
Re: [AMBER] a question about umbrella sampling (US)
(Wed Feb 04 2009 - 09:20:46 PST)
Re: [AMBER] Unit 5 Error on OPEN:mdin on clustuer with mpirun
(Wed Feb 04 2009 - 03:16:34 PST)
Re: [AMBER] out error
(Tue Feb 03 2009 - 11:18:39 PST)
Re: [AMBER] Unit 5 Error on OPEN:mdin on clustuer with mpirun
(Tue Feb 03 2009 - 09:39:58 PST)
Re: [AMBER] Unit 5 Error on OPEN:mdin on clustuer with mpirun
(Tue Feb 03 2009 - 09:17:53 PST)
Re: [AMBER] creating a restart file from md.out
(Tue Feb 03 2009 - 07:34:44 PST)
Re: [AMBER] creating a restart file from md.out
(Tue Feb 03 2009 - 05:36:44 PST)
Re: [AMBER] creating a restart file from md.out
(Tue Feb 03 2009 - 03:30:44 PST)
Re: [AMBER] md simulation on parallel PMEMD
(Mon Feb 02 2009 - 05:55:44 PST)
Re: [AMBER] strip frames from crd file
(Mon Feb 02 2009 - 04:12:27 PST)
Re: [AMBER] the output files
(Sun Feb 01 2009 - 10:11:51 PST)
Re: [AMBER] REMD fixed atoms
(Sun Feb 01 2009 - 10:00:33 PST)
Re: [AMBER] Can bonded pair of atoms be restrainted by NMR distance restraint?
(Sun Feb 01 2009 - 09:55:54 PST)
Re: [AMBER] Question on heating for homology based model.
(Sun Feb 01 2009 - 09:47:02 PST)
Carra, Claudio (JSC-SK)[USRA]
[AMBER] projections of trajectories onto the first 2 principal eigenvectors
(Thu Feb 12 2009 - 10:22:20 PST)
Catein Catherine
[AMBER] Scientific Linux 5.2
(Tue Feb 17 2009 - 23:13:23 PST)
chaitanya koppisetty
Re: [AMBER] nab compile error with -scalapack
(Tue Feb 03 2009 - 10:52:54 PST)
[AMBER] nab compile error with -scalapack
(Tue Feb 03 2009 - 05:23:46 PST)
CHAMI F.
[AMBER] Chlorine containing molecule
(Wed Feb 11 2009 - 05:39:19 PST)
Chih-Ying Lin
[AMBER] NVT vs NPT
(Tue Feb 17 2009 - 19:23:05 PST)
Chris Moth
Re: [AMBER] amber tools reading netcdf files
(Tue Feb 24 2009 - 09:35:22 PST)
Cojocaru,Vlad
RE: [AMBER] amber tools reading netcdf files
(Tue Feb 24 2009 - 10:46:27 PST)
Dan Kaps
Re: [AMBER] test charge
(Fri Feb 20 2009 - 08:58:17 PST)
Re: [AMBER] test charge
(Thu Feb 19 2009 - 18:22:31 PST)
[AMBER] test charge
(Wed Feb 18 2009 - 18:27:32 PST)
Daniel Emery
Re: [AMBER] Optimization problem
(Thu Feb 12 2009 - 06:11:14 PST)
[AMBER] Optimization problem
(Thu Feb 12 2009 - 02:01:49 PST)
Daniel Smith
Re: [AMBER] Solvating the interior of a channel
(Sun Feb 15 2009 - 14:40:23 PST)
Re: [AMBER] Solvating the interior of a channel
(Fri Feb 13 2009 - 13:02:24 PST)
[AMBER] Solvating the interior of a channel
(Tue Feb 10 2009 - 12:42:09 PST)
[AMBER] Solvating inside of a channel
(Mon Feb 09 2009 - 13:03:16 PST)
David A. Case
Re: [AMBER] A problem with xleap and pdb file
(Fri Feb 27 2009 - 05:56:26 PST)
Re: [AMBER] Simulated annealing
(Thu Feb 26 2009 - 07:52:18 PST)
Re: [AMBER] tleap errors !!
(Thu Feb 26 2009 - 05:45:49 PST)
Re: [AMBER] problem with amber installation
(Wed Feb 25 2009 - 04:45:01 PST)
Re: [AMBER] follow-up to previous discussion: nmr refinement of dimer
(Tue Feb 24 2009 - 05:15:27 PST)
Re: [AMBER] order of "upper" and "lower" bounds in the makeDIS_RST inputs
(Sat Feb 21 2009 - 15:51:38 PST)
Re: [AMBER] test charge
(Thu Feb 19 2009 - 20:48:29 PST)
Re: [AMBER] test charge
(Wed Feb 18 2009 - 20:24:04 PST)
Re: [AMBER] (NTB /= 0 && NTP /= 0) but IFBOX == 0 error
(Wed Feb 18 2009 - 12:35:12 PST)
Re: [AMBER] ./configure_amber: line 1211: cd: netcdf/src: No such file or directory
(Wed Feb 18 2009 - 10:11:56 PST)
Re: [AMBER] How to constrain the hydrogen bonding distances...
(Wed Feb 18 2009 - 06:28:56 PST)
Re: [AMBER] problem compiling nmode.c
(Tue Feb 17 2009 - 18:45:03 PST)
Re: [AMBER] PMF calculation
(Tue Feb 17 2009 - 18:23:20 PST)
Re: [AMBER] restraint angle
(Tue Feb 17 2009 - 09:52:49 PST)
Re: [AMBER] Amber 9 Install - AMBERBUILDFLAGS error
(Mon Feb 16 2009 - 20:29:41 PST)
Re: [AMBER] Normal errors on job kill?
(Mon Feb 16 2009 - 20:25:54 PST)
Re: [AMBER] New atom type with 7 bonds
(Mon Feb 16 2009 - 06:28:25 PST)
Re: [AMBER] Error installing Amber
(Mon Feb 16 2009 - 06:21:41 PST)
Re: [AMBER] install Amber 10 to Macbook
(Sat Feb 14 2009 - 15:17:53 PST)
Re: [AMBER] Question about improper torsions...
(Sat Feb 14 2009 - 05:32:21 PST)
Re: [AMBER] Optimization problem
(Thu Feb 12 2009 - 06:35:52 PST)
Re: [AMBER] nmr refinement of dimer
(Thu Feb 12 2009 - 05:08:08 PST)
Re: [AMBER] Optimization problem
(Thu Feb 12 2009 - 04:58:17 PST)
Re: [AMBER] Compiling Carnal Amber7 in Amber9
(Thu Feb 12 2009 - 04:58:03 PST)
Re: [AMBER] amber9 installation problem in SMP IA64
(Wed Feb 11 2009 - 05:07:48 PST)
Re: [AMBER] nmr refinement of dimer
(Wed Feb 11 2009 - 05:02:37 PST)
Re: [AMBER] AMBER: chiral restraint on protein
(Wed Feb 11 2009 - 04:56:05 PST)
Re: [AMBER] array out of bound in Amber10 tests
(Tue Feb 10 2009 - 13:30:36 PST)
Re: [AMBER] array out of bound in Amber10 tests
(Tue Feb 10 2009 - 08:39:43 PST)
Re: [AMBER] NAB md function prints strange output
(Tue Feb 10 2009 - 04:46:40 PST)
Re: [AMBER] amber9 installation problem in SMP IA64
(Tue Feb 10 2009 - 04:41:29 PST)
Re: [AMBER] second derivative matrix
(Mon Feb 09 2009 - 07:05:18 PST)
Re: [AMBER] NAB md function prints strange output
(Mon Feb 09 2009 - 04:58:43 PST)
Re: [AMBER] distance calculation by reading in the restraint file
(Fri Feb 06 2009 - 14:35:55 PST)
Re: [AMBER] distance calculation by reading in the restraint file
(Fri Feb 06 2009 - 14:03:08 PST)
Re: [AMBER] Solvation potential and free energies
(Fri Feb 06 2009 - 05:34:25 PST)
Re: [AMBER] amber9 installation problem in SMP IA64
(Fri Feb 06 2009 - 05:25:55 PST)
Re: [AMBER] second derivative matrix calculation
(Fri Feb 06 2009 - 05:19:52 PST)
Re: [AMBER] Citing AMBER Tools...
(Thu Feb 05 2009 - 07:44:37 PST)
Re: [AMBER] nab compile error with -scalapack
(Tue Feb 03 2009 - 06:27:24 PST)
Re: [AMBER] Langevin dynamics
(Mon Feb 02 2009 - 11:24:59 PST)
Re: [AMBER] precision in the trajectory files
(Mon Feb 02 2009 - 06:55:40 PST)
Re: [AMBER] md simulation on parallel PMEMD
(Mon Feb 02 2009 - 05:54:58 PST)
Re: [AMBER] Can bonded pair of atoms be restrainted by NMR distance restraint?
(Sun Feb 01 2009 - 10:35:03 PST)
David Mobley
[AMBER] paper of interest for FF development/solvent models
(Thu Feb 19 2009 - 07:15:04 PST)
David Patiño
Re: [AMBER] Error installing Amber
(Tue Feb 17 2009 - 06:58:05 PST)
[AMBER] Error installing Amber
(Mon Feb 16 2009 - 04:02:31 PST)
David Watson
Re: [AMBER] install Amber 10 to Macbook
(Sun Feb 15 2009 - 11:52:36 PST)
Diddo Diddens
[AMBER] Scaling of dipole interactions
(Tue Feb 10 2009 - 06:33:18 PST)
Dmitri Nilov
[AMBER] formate parameters
(Tue Feb 10 2009 - 06:47:31 PST)
Dmitry Osolodkin
[AMBER] Protein motions comparison
(Thu Feb 19 2009 - 03:58:24 PST)
drugdesign
[AMBER] protein monomerizartion times and simulation with implicit solvent
(Wed Feb 18 2009 - 02:27:17 PST)
Re: [AMBER] Unit 5 Error on OPEN:mdin on clustuer with mpirun
(Tue Feb 03 2009 - 21:46:19 PST)
[AMBER] Unit 5 Error on OPEN:mdin on clustuer with mpirun
(Tue Feb 03 2009 - 09:03:20 PST)
Francesco Pietra
[AMBER] MD simulation at constant pH
(Thu Feb 26 2009 - 02:52:47 PST)
Re: [AMBER] Any link to a major QM code?
(Mon Feb 16 2009 - 06:47:04 PST)
[AMBER] Any link to a major QM code?
(Sun Feb 15 2009 - 09:58:30 PST)
FyD
Re: [AMBER] Re: Antechamber
(Fri Feb 27 2009 - 05:12:16 PST)
Re: [AMBER] MD simulations on a protein with FAD and NADH
(Fri Feb 27 2009 - 00:24:37 PST)
Re: [AMBER] Iron 2+ parameters
(Mon Feb 16 2009 - 10:25:45 PST)
Re: [AMBER] RED-vIII: Scratch directory for Gaussian [NOT FOUND]
(Tue Feb 10 2009 - 07:05:56 PST)
Re: [AMBER] parameter files for D-amino acid
(Thu Feb 05 2009 - 07:00:55 PST)
Gard Nelson
[AMBER] compiling errors
(Wed Feb 04 2009 - 16:30:22 PST)
George Tzotzos
Re: [AMBER] RE: Tutorial 5
(Sun Feb 01 2009 - 13:04:36 PST)
Gijs Schaftenaar
[AMBER] Parmchk wrongly calculates missing parameters (fwd)
(Fri Feb 20 2009 - 05:16:17 PST)
gmail
Re: [AMBER] How to build reference coordinate file for targeted MD
(Thu Feb 05 2009 - 21:20:59 PST)
[AMBER] How to build reference coordinate file for targeted MD
(Wed Feb 04 2009 - 22:44:22 PST)
guardiani.fi.infn.it
[AMBER] Solvation potential and free energies
(Thu Feb 05 2009 - 04:27:21 PST)
Gustavo Seabra
Re: [AMBER] linux install problem
(Thu Feb 19 2009 - 12:47:18 PST)
Re: [AMBER] contant force pulling simulation with amber 10
(Mon Feb 16 2009 - 10:11:40 PST)
Re: [AMBER] Any link to a major QM code?
(Mon Feb 16 2009 - 08:51:03 PST)
Re: [AMBER] Any link to a major QM code?
(Sun Feb 15 2009 - 16:17:32 PST)
Re: [AMBER] Optimization problem
(Thu Feb 12 2009 - 06:48:23 PST)
Re: [AMBER] error in xleap: ligand binding using MMand QMMM tech
(Thu Feb 12 2009 - 06:32:17 PST)
Hannes Loeffler
Re: [AMBER] PMEMD vs GROMACS?
(Tue Feb 24 2009 - 00:39:29 PST)
Re: [AMBER] Protein motions comparison
(Thu Feb 19 2009 - 04:07:47 PST)
Re: [AMBER] projections of trajectories onto the first 2 principal eigenvectors
(Fri Feb 13 2009 - 01:33:19 PST)
Re: [AMBER] projections of trajectories onto the first 2 principal eigenvectors
(Fri Feb 13 2009 - 00:32:20 PST)
Re: [AMBER] pmemd on BlueGene/P?
(Fri Feb 06 2009 - 01:01:37 PST)
[AMBER] pmemd on BlueGene/P?
(Thu Feb 05 2009 - 05:09:45 PST)
Heath Watts
Re: [AMBER] glycam and solvateoct command
(Tue Feb 17 2009 - 14:31:35 PST)
[AMBER] glycam and solvateoct command
(Tue Feb 17 2009 - 11:51:13 PST)
Re: [AMBER] Beginner question
(Fri Feb 13 2009 - 17:20:46 PST)
Re: [AMBER] Beginner question
(Fri Feb 13 2009 - 17:19:44 PST)
[AMBER] Beginner question
(Fri Feb 13 2009 - 13:18:42 PST)
Hopkins, Robert
[AMBER] Equilibration Scaling to System Size
(Tue Feb 24 2009 - 14:31:37 PST)
[AMBER] Restarting an MD Simulation
(Wed Feb 04 2009 - 16:34:16 PST)
Hrvoje Brkić
[AMBER] Iron 2+ parameters
(Mon Feb 16 2009 - 05:53:57 PST)
Hu, Shaowen (JSC-SK)[Universities Space Research Association (USRA)]
RE: [AMBER] Simulated annealing
(Thu Feb 26 2009 - 08:30:47 PST)
RE: [AMBER] Simulated annealing
(Thu Feb 26 2009 - 08:22:59 PST)
Ibrahim Moustafa
Re: [AMBER] Simulated annealing
(Thu Feb 26 2009 - 08:32:32 PST)
Re: [AMBER] Simulated annealing
(Thu Feb 26 2009 - 07:28:44 PST)
[AMBER] Simulated annealing
(Wed Feb 25 2009 - 16:26:37 PST)
iccy liu
RE: [AMBER] atoms fly out of the box in NVT calculations
(Sun Feb 15 2009 - 15:34:37 PST)
[AMBER] atoms fly out of the box in NVT calculations
(Thu Feb 12 2009 - 13:48:24 PST)
James W
[AMBER] About the croase grainded FF
(Mon Feb 23 2009 - 23:58:12 PST)
Jason A. Ford-Green
Re: [AMBER] Solvating the interior of a channel
(Wed Feb 11 2009 - 08:04:24 PST)
Re: [AMBER] Resp charge
(Fri Feb 06 2009 - 12:38:29 PST)
[AMBER] PDB of a specific frame
(Wed Feb 04 2009 - 11:46:52 PST)
Jeffrey
Re: Re: Re: [AMBER] dipole correlation function
(Thu Feb 19 2009 - 17:31:08 PST)
Re: Re: [AMBER] dipole correlation function
(Thu Feb 19 2009 - 08:39:15 PST)
[AMBER] dipole correlation function
(Thu Feb 19 2009 - 06:18:20 PST)
[AMBER] IG not change at each restart of NPT simulation
(Wed Feb 18 2009 - 04:49:47 PST)
Re: Re: [AMBER] MD simulation with a partially flexible system
(Tue Feb 17 2009 - 18:19:47 PST)
[AMBER] MD simulation with a partially flexible system
(Tue Feb 17 2009 - 06:38:10 PST)
[AMBER] How to jude whether the trajectory is stable or not
(Thu Feb 12 2009 - 18:33:53 PST)
Jenny Iskrenova
Re: [AMBER] test charge
(Fri Feb 20 2009 - 12:32:14 PST)
Re: [AMBER] precision in the trajectory files
(Tue Feb 03 2009 - 09:07:58 PST)
[AMBER] precision in the trajectory files
(Mon Feb 02 2009 - 06:43:38 PST)
Jeremy Harris
[AMBER] amber tools reading netcdf files
(Tue Feb 24 2009 - 07:54:09 PST)
Jochen Heil
Re: [AMBER] NAB md function prints strange output
(Tue Feb 10 2009 - 04:19:56 PST)
[AMBER] NAB md function prints strange output
(Mon Feb 09 2009 - 03:30:21 PST)
Jose Borreguero
[AMBER] can ptraj output the trajectory of the residue CM?
(Mon Feb 16 2009 - 11:47:34 PST)
Kevin Wiehe
[AMBER] ptraj fails to recognize binary REMD output
(Fri Feb 06 2009 - 09:44:21 PST)
kureeckal ramesh
[AMBER] Re: Antechamber
(Fri Feb 27 2009 - 04:56:58 PST)
[AMBER] Antechamber
(Thu Feb 19 2009 - 17:36:03 PST)
[AMBER] error in xleap: ligand binding using MMand QMMM tech
(Thu Feb 12 2009 - 02:27:41 PST)
Re: [AMBER] Dr. Ramesh here
(Mon Feb 02 2009 - 06:22:51 PST)
Lachele Foley (Lists)
Re: [AMBER] glycam and solvateoct command
(Wed Feb 18 2009 - 07:00:34 PST)
Re: [AMBER] script to convert GLYCAM ff in CHARMM format
(Fri Feb 06 2009 - 06:57:17 PST)
Lake, Thomas
[AMBER] (no subject)
(Thu Feb 26 2009 - 08:19:53 PST)
li hui
[AMBER] contant force pulling simulation with amber 10
(Mon Feb 16 2009 - 09:01:36 PST)
liu junjun
Re: [AMBER] Can bonded pair of atoms be restrainted by NMR distance restraint?
(Mon Feb 02 2009 - 08:25:41 PST)
[AMBER] Can bonded pair of atoms be restrainted by NMR distance restraint?
(Sat Jan 31 2009 - 23:51:39 PST)
Lorenzo Gontrani
Re: [AMBER] g(r) extrapolation
(Thu Feb 19 2009 - 01:23:19 PST)
[AMBER] g(r) extrapolation
(Wed Feb 18 2009 - 07:16:26 PST)
Re: [AMBER] Solvation potential and free energies
(Thu Feb 05 2009 - 04:34:47 PST)
m m
[AMBER] restraint angle
(Tue Feb 17 2009 - 09:17:00 PST)
Mahmoud A. A. Ibrahim
[AMBER] APS & ff03
(Mon Feb 09 2009 - 06:49:56 PST)
Majeed Shaik
[AMBER] (NTB /= 0 && NTP /= 0) but IFBOX == 0 error
(Wed Feb 18 2009 - 12:09:17 PST)
[AMBER] How to constrain the hydrogen bonding distances...
(Wed Feb 18 2009 - 06:11:37 PST)
Manikandan Chandrasekaran
Re: [AMBER] Test run on Solaris 10 X 86
(Fri Feb 06 2009 - 09:39:54 PST)
Re: [AMBER] Test run on Solaris 10 X 86
(Wed Feb 04 2009 - 10:37:21 PST)
Re: [AMBER] Test run on Solaris 10 X 86
(Tue Feb 03 2009 - 12:28:37 PST)
Re: [AMBER] Test run on Solaris 10 X 86
(Mon Feb 02 2009 - 11:16:32 PST)
Mannan
[AMBER] MD simulations on a protein with FAD and NADH
(Thu Feb 26 2009 - 17:11:54 PST)
Marek Malý
[AMBER] Partial entropy calculations ?
(Fri Feb 27 2009 - 10:21:29 PST)
Re: [AMBER] MKL error ?
(Thu Feb 05 2009 - 12:00:10 PST)
Re: [AMBER] MKL error ?
(Thu Feb 05 2009 - 04:26:05 PST)
[AMBER] MKL error ?
(Tue Feb 03 2009 - 15:00:03 PST)
Re: [AMBER] -MMTSB instalation flag ?
(Tue Feb 03 2009 - 09:15:04 PST)
[AMBER] -MMTSB instalation flag ?
(Tue Feb 03 2009 - 07:31:38 PST)
Marie Brut
[AMBER] second derivative matrix
(Mon Feb 09 2009 - 00:53:01 PST)
[AMBER] second derivative matrix calculation
(Fri Feb 06 2009 - 02:47:18 PST)
Mark Dixon
Re: [AMBER] Current Amber10 bugfix.all doesn't apply cleanly
(Fri Feb 27 2009 - 08:44:28 PST)
[AMBER] Current Amber10 bugfix.all doesn't apply cleanly
(Thu Feb 26 2009 - 03:54:03 PST)
Markus Kaukonen
[AMBER] Re: AMBER: GBSA EGB = NaN
(Thu Feb 19 2009 - 05:34:38 PST)
[AMBER] Re: AMBER: GBSA EGB = NaN
(Wed Feb 18 2009 - 04:26:28 PST)
Massimiliano Bonomi
[AMBER] PLUMED release 1.0.0 available
(Thu Feb 26 2009 - 05:11:54 PST)
Maxime Louet
RE: [AMBER] secstruct
(Thu Feb 19 2009 - 06:17:17 PST)
Molecular Dynamics
[AMBER] a query
(Sat Feb 28 2009 - 11:45:46 PST)
Re: [AMBER] using ptraj
(Tue Feb 17 2009 - 06:11:16 PST)
Re: [AMBER] using ptraj
(Tue Feb 17 2009 - 05:31:02 PST)
Re: [AMBER] using ptraj
(Tue Feb 17 2009 - 03:44:09 PST)
[AMBER] using ptraj
(Mon Feb 16 2009 - 12:31:42 PST)
monica bhattacharee
[AMBER] question about ptraj hydrogen bond analysis
(Wed Feb 18 2009 - 11:45:17 PST)
nancy4619
Re:Re: [AMBER] A problem with xleap and pdb file
(Fri Feb 27 2009 - 06:20:17 PST)
[AMBER] I need a professional help about xleap and pdb file
(Fri Feb 27 2009 - 05:56:14 PST)
[AMBER] A problem with xleap and pdb file
(Fri Feb 27 2009 - 04:28:01 PST)
nicholus bhattacharjee
Re: [AMBER] problem with amber installation
(Tue Feb 24 2009 - 20:29:11 PST)
[AMBER] problem with amber installation
(Mon Feb 23 2009 - 22:50:12 PST)
oguz gurbulak
[AMBER] using Gromacs for analysis
(Fri Feb 27 2009 - 09:03:54 PST)
[AMBER] perform an analysis using ptraj
(Tue Feb 24 2009 - 08:19:11 PST)
Re: [AMBER] density and volume in NVT ensamble
(Mon Feb 16 2009 - 06:32:07 PST)
Re: [AMBER] density and volume in NVT ensamble
(Mon Feb 16 2009 - 06:27:01 PST)
Re: [AMBER] density and volume in NVT ensamble
(Mon Feb 16 2009 - 06:25:52 PST)
[AMBER] density and volume in NVT ensamble
(Mon Feb 16 2009 - 05:58:13 PST)
Re: [AMBER] the output files
(Tue Feb 10 2009 - 06:11:44 PST)
Re: [AMBER] the output files
(Tue Feb 10 2009 - 03:14:58 PST)
Re: [AMBER] the output files
(Mon Feb 09 2009 - 05:03:47 PST)
[AMBER] MD analysis
(Sat Feb 07 2009 - 06:56:10 PST)
[AMBER] MSD and stress tensors
(Fri Feb 06 2009 - 03:09:12 PST)
Re: [AMBER] creating a restart file from md.out
(Tue Feb 03 2009 - 07:29:47 PST)
Re: [AMBER] creating a restart file from md.out
(Tue Feb 03 2009 - 05:22:45 PST)
[AMBER] creating a restart file from md.out
(Tue Feb 03 2009 - 02:44:10 PST)
[AMBER] md simulation on parallel PMEMD
(Mon Feb 02 2009 - 05:32:31 PST)
[AMBER] the output files
(Sun Feb 01 2009 - 03:13:02 PST)
parul sharma
Re: [AMBER] PME doesn't work
(Mon Feb 23 2009 - 04:03:54 PST)
[AMBER] PME doesn't work
(Mon Feb 23 2009 - 01:43:40 PST)
Re: [AMBER] Problem with NVT and NPT
(Fri Feb 20 2009 - 05:27:51 PST)
[AMBER] Problem with NVT and NPT
(Fri Feb 20 2009 - 05:07:36 PST)
Re: [AMBER] Confusion regarding box size
(Tue Feb 10 2009 - 05:29:38 PST)
[AMBER] Irregularity in box during md
(Tue Feb 10 2009 - 02:35:18 PST)
[AMBER] Confusion regarding box size
(Mon Feb 09 2009 - 23:20:01 PST)
Patrick Schopf
[AMBER] RED-vIII: Scratch directory for Gaussian [NOT FOUND]
(Tue Feb 10 2009 - 06:15:42 PST)
Peter Gannett
Re:Re: [AMBER] A problem with xleap and pdb file
(Fri Feb 27 2009 - 06:32:20 PST)
Re: [AMBER] I need a professional help about xleap and pdb file
(Fri Feb 27 2009 - 06:17:31 PST)
Piotr Cieplak
Re: [AMBER] Partial entropy calculations ?
(Fri Feb 27 2009 - 10:44:21 PST)
[AMBER] order of "upper" and "lower" bounds in the makeDIS_RST inputs
(Fri Feb 20 2009 - 13:40:14 PST)
Prem Prakash Pathak
[AMBER] constph tutorial help
(Tue Feb 17 2009 - 04:53:37 PST)
[AMBER] how to get amber 10
(Tue Feb 10 2009 - 18:42:37 PST)
priya priya
Re: [AMBER] Radius of Gyration
(Tue Feb 03 2009 - 21:30:07 PST)
Qizhi Cui
Re: [AMBER] DFT SK parameter for P atom
(Mon Feb 02 2009 - 13:37:41 PST)
[AMBER] DFT SK parameter for P atom
(Mon Feb 02 2009 - 11:59:19 PST)
Rausch, Felix
RE: [AMBER] Error running sander.MPI
(Tue Feb 17 2009 - 00:15:19 PST)
RE: [AMBER] adding MG2 problem
(Wed Feb 04 2009 - 05:04:51 PST)
Robert Duke
Re: [AMBER] PME doesn't work
(Mon Feb 23 2009 - 05:48:04 PST)
Re: [AMBER] IG not change at each restart of NPT simulation
(Wed Feb 18 2009 - 06:15:00 PST)
Re: [AMBER] IG not change at each restart of NPT simulation
(Wed Feb 18 2009 - 05:57:35 PST)
Re: [AMBER] Stability of a long NPT md trajectory?
(Tue Feb 10 2009 - 12:29:15 PST)
Re: [AMBER] Stability of a long NPT md trajectory?
(Tue Feb 10 2009 - 05:40:55 PST)
Re: [AMBER] Stability of a long NPT md trajectory?
(Mon Feb 09 2009 - 20:20:57 PST)
Re: [AMBER] Stability of a long NPT md trajectory?
(Mon Feb 09 2009 - 18:21:31 PST)
Re: [AMBER] Stability of a long NPT md trajectory?
(Mon Feb 09 2009 - 05:25:10 PST)
Re: [AMBER] pmemd on BlueGene/P?
(Thu Feb 05 2009 - 05:42:32 PST)
Re: [AMBER] pmemd installation in intelmpi
(Wed Feb 04 2009 - 20:34:37 PST)
Re: [AMBER] md simulation on parallel PMEMD
(Mon Feb 02 2009 - 06:03:59 PST)
Ross Walker
[AMBER] IMPORTANT INFO: Regarding Anonymous postings to the AMBER mailing list.
(Sat Feb 28 2009 - 14:19:16 PST)
RE: [AMBER] PCL
(Sat Feb 28 2009 - 09:23:30 PST)
RE: Re: [AMBER] A problem with xleap and pdb file
(Fri Feb 27 2009 - 07:55:23 PST)
RE: [AMBER] reg.targeted molecular dynamics
(Fri Feb 27 2009 - 07:11:44 PST)
RE: [AMBER] MD simulations on a protein with FAD and NADH
(Thu Feb 26 2009 - 20:32:05 PST)
RE: [AMBER] Error in using Amber
(Wed Feb 25 2009 - 22:03:12 PST)
RE: [AMBER] reg.targeted molecular dynamics
(Wed Feb 25 2009 - 07:12:29 PST)
RE: [AMBER] problem with amber installation
(Wed Feb 25 2009 - 07:05:26 PST)
Re: [AMBER] atoms fly out of the box in NVT calculations
(Thu Feb 12 2009 - 18:22:57 PST)
RE: [AMBER] Compiling Carnal Amber7 in Amber9
(Thu Feb 12 2009 - 06:55:54 PST)
RE: [AMBER] amber9 installation problem in SMP IA64
(Thu Feb 12 2009 - 06:54:49 PST)
RE: [AMBER] Compiling Carnal Amber7 in Amber9
(Wed Feb 11 2009 - 08:53:10 PST)
RE: [AMBER] how to get amber 10
(Tue Feb 10 2009 - 19:20:33 PST)
RE: [AMBER] amber9 installation problem in SMP IA64
(Tue Feb 10 2009 - 09:56:22 PST)
RE: [AMBER] the output files
(Tue Feb 10 2009 - 09:45:37 PST)
RE: [AMBER] parmchk
(Mon Feb 09 2009 - 08:28:20 PST)
RE: [AMBER] How to build reference coordinate file for targeted MD
(Fri Feb 06 2009 - 00:14:14 PST)
RE: [AMBER] mpirun problem in HPC
(Fri Feb 06 2009 - 00:05:37 PST)
RE: [AMBER] production run terminates due to (*) symbols in xxx.rst
(Thu Feb 05 2009 - 10:58:41 PST)
RE: [AMBER] MKL error ?
(Thu Feb 05 2009 - 10:29:45 PST)
RE: [AMBER] Restarting an MD Simulation
(Wed Feb 04 2009 - 19:24:56 PST)
RE: [AMBER] Restarting an MD Simulation
(Wed Feb 04 2009 - 19:03:36 PST)
RE: [AMBER] compiling errors
(Wed Feb 04 2009 - 16:48:14 PST)
RE: [AMBER] MKL error ?
(Tue Feb 03 2009 - 21:22:48 PST)
RE: [AMBER] Unit 5 Error on OPEN:mdin on clustuer with mpirun
(Tue Feb 03 2009 - 09:21:07 PST)
s. Bill
[AMBER] parmchk
(Mon Feb 09 2009 - 07:55:20 PST)
Sally Pias
[AMBER] follow-up to previous discussion: nmr refinement of dimer
(Mon Feb 23 2009 - 23:50:41 PST)
Re: [AMBER] nmr refinement of dimer
(Thu Feb 12 2009 - 01:17:44 PST)
[AMBER] nmr refinement of dimer
(Wed Feb 11 2009 - 01:05:56 PST)
Sampath Koppole
[AMBER] tleap errors !!
(Thu Feb 26 2009 - 01:47:48 PST)
Sasha Buzko
Re: [AMBER] PMEMD vs GROMACS?
(Tue Feb 24 2009 - 09:15:59 PST)
[AMBER] PMEMD vs GROMACS?
(Mon Feb 23 2009 - 11:55:27 PST)
Scott Brozell
Re: [AMBER] adding MG2 problem
(Tue Feb 03 2009 - 11:09:32 PST)
Re: [AMBER] -MMTSB instalation flag ?
(Tue Feb 03 2009 - 09:38:11 PST)
Re: [AMBER] -MMTSB instalation flag ?
(Tue Feb 03 2009 - 09:06:47 PST)
Shan-ho Tsai
Re: [AMBER] problem compiling nmode.c
(Thu Feb 19 2009 - 06:49:39 PST)
[AMBER] problem compiling nmode.c
(Tue Feb 17 2009 - 12:38:00 PST)
Re: [AMBER] array out of bound in Amber10 tests
(Mon Feb 16 2009 - 08:53:05 PST)
Re: [AMBER] array out of bound in Amber10 tests
(Wed Feb 11 2009 - 14:24:10 PST)
Re: [AMBER] array out of bound in Amber10 tests
(Wed Feb 11 2009 - 07:38:23 PST)
Re: [AMBER] array out of bound in Amber10 tests
(Tue Feb 10 2009 - 13:04:43 PST)
[AMBER] array out of bound in Amber10 tests
(Tue Feb 10 2009 - 08:19:42 PST)
Re: [AMBER] REM_hybrid test fails on AIX
(Thu Feb 05 2009 - 08:44:43 PST)
Shozeb Haider
Re: [AMBER] Solvating the interior of a channel
(Wed Feb 11 2009 - 05:15:07 PST)
Siddharth Rastogi
[AMBER] distance matrix plot and secondary structure analysis
(Wed Feb 18 2009 - 22:17:47 PST)
Simon Becker
Re: [AMBER] reg.Targeted molecular dynamics
(Wed Feb 18 2009 - 03:38:54 PST)
sri noraima othman
Re: [AMBER] Error in using Amber
(Wed Feb 25 2009 - 22:27:14 PST)
[AMBER] Error in using Amber
(Wed Feb 25 2009 - 19:27:29 PST)
Swarup Gupta
[AMBER] non bonded parameteters index
(Thu Feb 12 2009 - 16:07:46 PST)
Syed Tarique Moin
Re: [AMBER] Iron 2+ parameters
(Mon Feb 16 2009 - 08:25:34 PST)
Therese Malliavin
Re: [AMBER] nmr refinement of dimer
(Wed Feb 11 2009 - 02:57:06 PST)
Thomas Cheatham III
Re: [AMBER] problem about trajectory analysis
(Wed Feb 25 2009 - 16:57:49 PST)
Re: [AMBER] (no subject)
(Wed Feb 25 2009 - 16:48:56 PST)
Re: [AMBER] ptraj analyze
(Wed Feb 25 2009 - 16:45:17 PST)
Re: [AMBER] question about ptraj hydrogen bond analysis
(Wed Feb 18 2009 - 12:21:27 PST)
Re: [AMBER] g(r) extrapolation
(Wed Feb 18 2009 - 09:15:36 PST)
Tyler Luchko
Re: [AMBER] install Amber 10 to Macbook
(Sun Feb 15 2009 - 11:27:53 PST)
vallespardojl.chem.leidenuniv.nl
Re: [AMBER] extract frames from a .mdcrd
(Tue Feb 10 2009 - 00:52:19 PST)
Re: [AMBER] Confusion regarding box size
(Tue Feb 10 2009 - 00:35:24 PST)
[AMBER] extract frames from a .mdcrd
(Fri Feb 06 2009 - 02:48:23 PST)
Re: [AMBER] production run terminates due to (*) symbols in xxx.rst
(Thu Feb 05 2009 - 02:28:33 PST)
Vijay Manickam Achari
[AMBER] Error running sander.MPI
(Mon Feb 16 2009 - 00:23:05 PST)
RE: [AMBER] amber9 installation problem in SMP IA64
(Thu Feb 12 2009 - 01:21:01 PST)
Re: [AMBER] amber9 installation problem in SMP IA64
(Thu Feb 12 2009 - 01:13:55 PST)
RE: [AMBER] Compiling Carnal Amber7 in Amber9
(Thu Feb 12 2009 - 01:12:29 PST)
RE: [AMBER] amber9 installation problem in SMP IA64
(Wed Feb 11 2009 - 01:36:31 PST)
Re: [AMBER] Compiling Carnal Amber7 in Amber9
(Tue Feb 10 2009 - 23:58:08 PST)
Re: [AMBER] amber9 installation problem in SMP IA64
(Tue Feb 10 2009 - 00:30:55 PST)
[AMBER] mpirun problem in HPC
(Thu Feb 05 2009 - 23:01:29 PST)
[AMBER] amber9 installation problem in SMP IA64
(Thu Feb 05 2009 - 23:00:16 PST)
Re: [AMBER] production run terminates due to (*) symbols in xxx.rst
(Thu Feb 05 2009 - 18:50:20 PST)
Re: [AMBER] production run terminates due to (*) symbols in xxx.rst
(Thu Feb 05 2009 - 02:58:26 PST)
Re: [AMBER] pmemd installation in intelmpi
(Thu Feb 05 2009 - 00:38:38 PST)
[AMBER] error in executing sander.MPI in amber9
(Thu Feb 05 2009 - 00:37:09 PST)
[AMBER] production run terminates due to (*) symbols in xxx.rst
(Wed Feb 04 2009 - 20:17:38 PST)
[AMBER] Compiling Carnal Amber7 in Amber9
(Wed Feb 04 2009 - 19:21:14 PST)
[AMBER] pmemd installation in intelmpi
(Wed Feb 04 2009 - 19:16:06 PST)
vijayaraj.clri.res.in
Re: [AMBER] parameter files for D-amino acid
(Thu Feb 05 2009 - 06:49:56 PST)
Vlad Cojocaru
Re: [AMBER] PMEMD vs GROMACS?
(Tue Feb 24 2009 - 00:46:36 PST)
Re: [AMBER] About the croase grainded FF
(Tue Feb 24 2009 - 00:40:53 PST)
Re: [AMBER] PMEMD vs GROMACS?
(Tue Feb 24 2009 - 00:24:16 PST)
Vsatheesh Patil
[AMBER] parameter files for D-amino acid
(Thu Feb 05 2009 - 05:04:12 PST)
waleed zalloum
[AMBER] PCL
(Sat Feb 28 2009 - 09:17:51 PST)
[AMBER] (no subject)
(Wed Feb 25 2009 - 08:41:14 PST)
Wang,Ying
[AMBER] How to get the energy of a molecule in a whole system
(Tue Feb 17 2009 - 08:28:39 PST)
[AMBER] how can i deal with large number atoms
(Wed Feb 04 2009 - 21:04:23 PST)
Wei Huang
[AMBER] Question about NAB module
(Sat Feb 28 2009 - 16:23:49 PST)
Wei Zhang
Re: [AMBER] Confusion regarding box size
(Tue Feb 10 2009 - 05:07:38 PST)
xiaonan zhang
Re: [AMBER] How to build reference coordinate file for targeted MD
(Thu Feb 05 2009 - 04:00:38 PST)
xiaoqin huang
RE: [AMBER] distance calculation by reading in the restraint file
(Fri Feb 06 2009 - 15:28:59 PST)
RE: [AMBER] distance calculation by reading in the restraint file
(Fri Feb 06 2009 - 10:34:34 PST)
[AMBER] distance calculation by reading in the restraint file
(Fri Feb 06 2009 - 09:52:56 PST)
RE: [AMBER] a question about umbrella sampling (US)
(Wed Feb 04 2009 - 14:23:12 PST)
[AMBER] a question about umbrella sampling (US)
(Wed Feb 04 2009 - 09:12:02 PST)
Xu Dong
Re: [AMBER] A beginner's question for using AMBER to do cell membrane simulation and molecular transportation
(Sat Feb 21 2009 - 13:40:03 PST)
[AMBER] A beginner's question for using AMBER to do cell membrane simulation and molecular transportation
(Sat Feb 21 2009 - 12:27:29 PST)
[AMBER] Need suggestion on payment for Ph.D student majored in molecular simulation
(Tue Feb 17 2009 - 10:54:58 PST)
Ye MEI
Re: [AMBER] Unit 5 Error on OPEN:mdin on clustuer with mpirun
(Tue Feb 03 2009 - 09:12:54 PST)
Last message date
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Sun Mar 01 2009 - 01:09:59 PST
Archived on
: Wed Nov 13 2024 - 05:53:47 PST
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