Dear amber users,
I've made a MD job. The output file seems correct, but when I check
the final structure in the restart file with the VMD (.rst file + .top
file) there are something wrong (appears a hole in the solvatation
cubic box).
For this reason I want extract different frames from the mdcrd file.
What is the best option for made this? Can I visualize the frames
directly with ptraj? or I create a crd file with ptraj, and then I
visualize this file with VMD?
A lot of thanks,
José Luis
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Received on Sun Feb 08 2009 - 01:07:37 PST
