numerals? you should get letters, which stand for the sec structure
types as defined by DSSP.
Helix, Turn, G for 3-10, b and B for beta sheet (parallel and anti) and so on.
W. Kabsch and C. Sander. Dictionary of Protein Secondary Structure:
Pattern Recognition of Hydrogen Bonded and Geometrical Features.
Biopolymers 22: 2577-2637 (1983).
On Thu, Feb 19, 2009 at 8:22 AM, Beale, John <jbeale.stlcop.edu> wrote:
> What do the numerals in the secstruct.sum file created by using
> "secstruct" in ptraj signify?
>
>
>
> John Beale
>
>
>
> John M. Beale, Ph,D,
>
> Associate Professor of Medicinal Chemistry
>
> St. Louis College of Pharmacy
>
> 4588 Parkview Place
>
> St. Louis, Missouri 63110
>
> (314)-446-8461
>
> Cell: (314)-315-0409
>
> FAX (314) 446-8460
>
> jbeale.stlcop.edu
>
>
>
>
>
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Received on Fri Feb 20 2009 - 01:17:20 PST
