Dear Amber,
I would like to do Targeted Molecular
Dynamics for DNA .
I am having the crystal structure of
two different DNA structures
from the same sequence among them one
is a junction
the all atom RMSD between the two is
14.54.
among this two i kept one as a
referance coordinate.is it possible to do TMD with such a huge RMSD difference ,
I saw the test case given in the package
i could not under stand the minimization procedure
can any one suggest me how minimization to be carried out .thanks in advance
balajiUOM
_________________________________________________________________
For the freshest Indian Jobs Visit MSN Jobs
http://www.in.msn.com/jobs_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Feb 11 2009 - 01:20:34 PST
