Amber Archive Jun 2007 by author
499 messages
:
Starting
Sun Jun 03 2007 - 06:07:33 PDT,
Ending
Sun Jul 01 2007 - 06:07:55 PDT
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Abi Ghanem josephine
AMBER: Restraining valence angles
(Wed Jun 06 2007 - 01:35:12 PDT)
Achuth Prabhu
AMBER: Ptraj hbond analysis
(Tue Jun 05 2007 - 07:51:54 PDT)
Adrian Roitberg
Re: AMBER: Re: Strange shape in my MD simulations
(Tue Jun 19 2007 - 07:16:17 PDT)
Re: AMBER: Re: Strange shape in my MD simulations
(Tue Jun 19 2007 - 05:57:07 PDT)
Alessandro Nascimento
AMBER: Improving pmemd parallel scaling
(Thu Jun 28 2007 - 09:07:15 PDT)
Alexandar T Tzanov
AMBER: Re: RE: Problems with Ifort 9.1.047 on Altix (Was: RE: Re: AMBER: $AMBERHOME on PATH)
(Fri Jun 29 2007 - 07:48:13 PDT)
Re: RE: Re: AMBER: $AMBERHOME on PATH
(Thu Jun 28 2007 - 08:39:57 PDT)
Andreas Svrcek-Seiler
Re: AMBER: configure question
(Thu Jun 28 2007 - 09:49:38 PDT)
Re: AMBER: Math libraries
(Thu Jun 28 2007 - 09:27:28 PDT)
Andy Purkiss-Trew
Re: AMBER: problems using TIP4PBOX
(Wed Jun 13 2007 - 05:36:14 PDT)
RE: AMBER: problem running parallel jobs
(Thu Jun 07 2007 - 02:53:34 PDT)
Anthony Cruz Balberdi
AMBER: S-nitrocysteine
(Wed Jun 13 2007 - 06:12:00 PDT)
Austin B. Yongye
Re: AMBER: Ptraj: reading PDB files
(Thu Jun 07 2007 - 07:16:10 PDT)
AMBER: Ptraj: reading PDB files
(Wed Jun 06 2007 - 14:37:31 PDT)
backy
Re: AMBER: problems in adding ACE and NME group
(Wed Jun 27 2007 - 23:13:02 PDT)
Re: AMBER: problems in adding ACE and NME group
(Tue Jun 26 2007 - 23:55:47 PDT)
Re: AMBER: problems in adding ACE and NME group
(Mon Jun 25 2007 - 06:21:47 PDT)
Re: AMBER: problems in adding ACE and NME group
(Wed Jun 20 2007 - 22:45:56 PDT)
Re: AMBER: problems in adding ACE and NME group
(Wed Jun 20 2007 - 22:00:12 PDT)
Re: AMBER: problems in adding ACE and NME group
(Wed Jun 20 2007 - 21:00:39 PDT)
Re: AMBER: problems in adding ACE and NME group
(Wed Jun 20 2007 - 20:54:47 PDT)
Re: AMBER: problems in adding ACE and NME group
(Wed Jun 20 2007 - 06:15:25 PDT)
AMBER: problems in adding ACE and NME group
(Wed Jun 20 2007 - 02:09:26 PDT)
Barbault Florent
Re: AMBER: "distance" command in ptraj
(Sat Jun 02 2007 - 08:28:44 PDT)
Beale, John
AMBER: Dihedral driver
(Thu Jun 07 2007 - 13:08:35 PDT)
Bill Ross
Re: AMBER: Saving a structuring from trajectory
(Fri Jun 15 2007 - 13:43:23 PDT)
Re: AMBER: Installing on windows
(Mon Jun 11 2007 - 12:14:04 PDT)
Re: AMBER: Installing on windows
(Mon Jun 11 2007 - 12:01:06 PDT)
BJÖRN KARLSSON
AMBER: RDF of pure chloroform
(Mon Jun 25 2007 - 08:56:19 PDT)
AMBER: Rdf question
(Sun Jun 10 2007 - 12:51:16 PDT)
AMBER: g(r) in mixtures?
(Wed Jun 06 2007 - 00:56:05 PDT)
Brent Krueger
AMBER: ff99 vs ff99SB for RNA
(Thu Jun 14 2007 - 07:05:12 PDT)
brmeher.iitg.ernet.in
AMBER: conversion of Macromodel substructure format to .frcmod file
(Thu Jun 28 2007 - 03:24:24 PDT)
AMBER: Antechamber--Boron Parameters
(Mon Jun 25 2007 - 03:04:30 PDT)
Brooke Elizabeth Adams
Re: AMBER: frcmod
(Mon Jun 18 2007 - 13:02:13 PDT)
Re: AMBER: frcmod
(Mon Jun 18 2007 - 12:06:34 PDT)
Re: AMBER: frcmod
(Fri Jun 15 2007 - 12:11:00 PDT)
AMBER: frcmod
(Tue Jun 12 2007 - 13:38:50 PDT)
Carlos Simmerling
Re: AMBER: Sander Error
(Fri Jun 29 2007 - 19:04:29 PDT)
Re: AMBER: radius of gyration
(Fri Jun 29 2007 - 04:54:28 PDT)
Re: AMBER: bugfix.all
(Wed Jun 27 2007 - 13:52:15 PDT)
Re: AMBER: rst overflow for implicit REMD
(Tue Jun 26 2007 - 08:35:47 PDT)
Re: AMBER: Offending restraints????
(Tue Jun 26 2007 - 08:33:47 PDT)
Re: AMBER: Offending restraints????
(Tue Jun 26 2007 - 06:59:24 PDT)
Re: AMBER: Simulated Annealing
(Tue Jun 26 2007 - 04:16:25 PDT)
Re: AMBER: Re: ff02 and ff03 parameters
(Mon Jun 25 2007 - 16:28:02 PDT)
Re: AMBER: remd/rdc's
(Sat Jun 23 2007 - 05:43:21 PDT)
Re: AMBER: radius of gyration
(Fri Jun 22 2007 - 08:40:27 PDT)
Re: AMBER: radius of gyration
(Fri Jun 22 2007 - 08:14:19 PDT)
Re: AMBER: testing protein stability
(Fri Jun 22 2007 - 04:06:16 PDT)
Re: AMBER: problems in adding ACE and NME group
(Wed Jun 20 2007 - 21:28:30 PDT)
Re: AMBER: problems in adding ACE and NME group
(Wed Jun 20 2007 - 08:37:45 PDT)
Re: AMBER: problems in adding ACE and NME group
(Wed Jun 20 2007 - 04:28:46 PDT)
Re: AMBER: H bond
(Tue Jun 19 2007 - 04:24:27 PDT)
Re: AMBER: shell model MD
(Mon Jun 18 2007 - 09:53:56 PDT)
Re: AMBER: problem with running rem on amber9 (NOT A REMD PROBLEM)
(Mon Jun 18 2007 - 08:31:19 PDT)
Re: AMBER: problem with running rem on amber9
(Mon Jun 18 2007 - 08:10:37 PDT)
Re: AMBER: problem with running rem on amber9
(Mon Jun 18 2007 - 05:46:29 PDT)
Re: AMBER: implementation of GB model in AMBER
(Sun Jun 17 2007 - 05:58:11 PDT)
Re: AMBER: performance with implicit solvent
(Fri Jun 15 2007 - 13:17:28 PDT)
Re: AMBER: ff99 vs ff99SB for RNA
(Thu Jun 14 2007 - 09:03:03 PDT)
Re: AMBER: ff99 vs ff99SB for RNA
(Thu Jun 14 2007 - 07:57:02 PDT)
Re: AMBER: NMR vs. X-ray structures
(Tue Jun 12 2007 - 03:57:12 PDT)
Re: AMBER: Installing on windows
(Sun Jun 10 2007 - 16:54:04 PDT)
Re: AMBER: problem installing amber7
(Sun Jun 10 2007 - 08:23:10 PDT)
Re: AMBER:
(Fri Jun 08 2007 - 11:47:43 PDT)
Re: AMBER: Potential of mean force.
(Fri Jun 08 2007 - 05:08:06 PDT)
Re: AMBER: extracting starting structures from equilibration trajectory
(Thu Jun 07 2007 - 12:41:36 PDT)
Re: AMBER: problem with starting REM on amber9
(Tue Jun 05 2007 - 06:42:29 PDT)
Re: AMBER: LES problem
(Tue Jun 05 2007 - 05:14:15 PDT)
Re: AMBER: Problem about prepare the model when running antechamber
(Mon Jun 04 2007 - 13:52:23 PDT)
Re: AMBER: Installation Question
(Mon Jun 04 2007 - 07:16:30 PDT)
Re: AMBER: Once again, "distance" command in ptraj
(Mon Jun 04 2007 - 07:15:22 PDT)
Re: AMBER: "distance" command in ptraj
(Sat Jun 02 2007 - 04:56:15 PDT)
Carra, Claudio (JSC-SK)[USRA]
AMBER: unres
(Mon Jun 18 2007 - 13:55:20 PDT)
Catein Catherine
AMBER: spring constant for restraint
(Thu Jun 14 2007 - 02:29:17 PDT)
AMBER: (no subject)
(Wed Jun 13 2007 - 22:54:28 PDT)
AMBER: Input files for the Potential of mean force.
(Sun Jun 10 2007 - 19:43:12 PDT)
AMBER: Potential of mean force.
(Fri Jun 08 2007 - 05:01:42 PDT)
AMBER: Should we just vary one parameter at a time only for PMF calculations?
(Thu Jun 07 2007 - 08:18:51 PDT)
AMBER: How to fix two angle but do umberlla sampling for distance?
(Thu Jun 07 2007 - 08:14:30 PDT)
Cen Gao
AMBER: umbrella sampling dihedral restraint question
(Thu Jun 14 2007 - 13:33:51 PDT)
Cenk Andac
AMBER: error due to exceeding left-hand side digital numbers in restart output
(Mon Jun 18 2007 - 01:09:36 PDT)
Re: AMBER: Nucleic acid analyse : base pair parameters, backbone torsions...
(Mon Jun 04 2007 - 15:00:25 PDT)
Chrystal Bruce
AMBER: Installation Question
(Mon Jun 04 2007 - 07:53:46 PDT)
clarkzhy
To Mr. Ross Walker Re: RE: AMBER: How to add semi-experience parameter in divcon?
(Thu Jun 21 2007 - 18:19:23 PDT)
AMBER: How to add semi-experience parameter in divcon?
(Tue Jun 19 2007 - 07:23:04 PDT)
Colby C
Re: AMBER: Sander Error
(Fri Jun 29 2007 - 14:25:35 PDT)
AMBER: Sander Error
(Fri Jun 29 2007 - 07:47:05 PDT)
Re: AMBER: 5 Ligands and 1 Protein
(Thu Jun 21 2007 - 14:45:46 PDT)
Re: AMBER: 5 Ligands and 1 Protein
(Wed Jun 20 2007 - 19:01:40 PDT)
Re: AMBER: 5 Ligands and 1 Protein
(Wed Jun 20 2007 - 17:10:22 PDT)
AMBER: 5 Ligands and 1 Protein
(Wed Jun 20 2007 - 11:07:33 PDT)
Re: AMBER: xleap on cygwin
(Tue Jun 12 2007 - 17:42:52 PDT)
Re: AMBER: xleap on cygwin
(Tue Jun 12 2007 - 09:34:21 PDT)
AMBER: xleap on cygwin
(Mon Jun 11 2007 - 18:59:17 PDT)
AMBER: Amber 9 on IRIX 6.5
(Mon Jun 11 2007 - 18:55:25 PDT)
Re: AMBER: Installing on windows
(Mon Jun 11 2007 - 10:14:33 PDT)
Re: AMBER: Installing on windows
(Mon Jun 11 2007 - 08:17:07 PDT)
Re: AMBER: Installing on windows
(Mon Jun 11 2007 - 07:42:40 PDT)
Re: AMBER: Installing on windows
(Mon Jun 11 2007 - 05:56:39 PDT)
Re: AMBER: Installing on windows
(Sun Jun 10 2007 - 20:34:58 PDT)
Re: AMBER: Installing on windows
(Sun Jun 10 2007 - 18:48:30 PDT)
AMBER: Installing on windows
(Sun Jun 10 2007 - 16:42:25 PDT)
cristian
AMBER: mmpbsa decomposition error
(Fri Jun 08 2007 - 08:34:21 PDT)
Re: AMBER: rms in nmode
(Fri Jun 01 2007 - 00:59:18 PDT)
D.Usharani
Re: AMBER: Reg restraint value obtained during umbrella sampling
(Thu Jun 07 2007 - 23:01:46 PDT)
AMBER: Reg COM restraint to DNA
(Wed Jun 06 2007 - 02:56:00 PDT)
Re: AMBER: Reg restraint value obtained during umbrella sampling
(Sat Jun 02 2007 - 04:07:43 PDT)
Re: AMBER: Reg restraint value obtained during umbrella sampling
(Fri Jun 01 2007 - 10:12:23 PDT)
David A. Case
Re: AMBER: amber7 and xleap
(Sat Jun 30 2007 - 17:57:13 PDT)
Re: AMBER: Problem with leaprc
(Sat Jun 30 2007 - 08:32:03 PDT)
Re: Fwd: Re: AMBER: make test serial
(Sat Jun 30 2007 - 08:28:01 PDT)
Re: AMBER: make serial failure for xleap
(Fri Jun 29 2007 - 16:28:36 PDT)
Re: AMBER: Serial "make" failure with xleap
(Fri Jun 29 2007 - 11:16:54 PDT)
Re: Fwd: RE: Re: AMBER: $AMBERHOME on PATH
(Fri Jun 29 2007 - 09:05:09 PDT)
Re: AMBER: Problem with leaprc
(Fri Jun 29 2007 - 08:47:51 PDT)
Re: Re: AMBER: $AMBERHOME on PATH
(Thu Jun 28 2007 - 11:37:58 PDT)
Re: AMBER: configure question
(Thu Jun 28 2007 - 09:26:34 PDT)
Re: AMBER: problems in adding ACE and NME group
(Thu Jun 28 2007 - 09:04:52 PDT)
Re: RE: Re: AMBER: $AMBERHOME on PATH
(Thu Jun 28 2007 - 09:00:55 PDT)
Re: AMBER: remd/rdc's
(Thu Jun 28 2007 - 08:37:44 PDT)
Re: AMBER: bugfix.all
(Wed Jun 27 2007 - 13:55:52 PDT)
Re: Fwd: Re: AMBER: $AMBERHOME on PATH & compilations
(Wed Jun 27 2007 - 10:06:38 PDT)
Re: AMBER: problems in adding ACE and NME group
(Wed Jun 27 2007 - 09:19:51 PDT)
Re: AMBER: "FATAL: Atom xxx does not have a type."
(Tue Jun 26 2007 - 15:20:21 PDT)
Re: AMBER: Unexpected Failure in XLeap
(Tue Jun 26 2007 - 13:47:30 PDT)
Re: AMBER: $AMBERHOME on PATH
(Tue Jun 26 2007 - 11:01:02 PDT)
Re: AMBER: Offending restraints????
(Tue Jun 26 2007 - 09:37:21 PDT)
Re: AMBER: rst overflow for implicit REMD
(Tue Jun 26 2007 - 08:28:28 PDT)
Re: AMBER: Offending restraints????
(Tue Jun 26 2007 - 08:27:18 PDT)
Re: AMBER: set up system solution with 3 different components, each with multiple copies
(Tue Jun 26 2007 - 08:08:50 PDT)
Re: AMBER: Antechamber--Boron Parameters
(Mon Jun 25 2007 - 18:08:48 PDT)
Re: AMBER: PMF calculation
(Mon Jun 25 2007 - 17:47:25 PDT)
Re: AMBER: prepin for metal centre
(Mon Jun 25 2007 - 17:43:26 PDT)
Re: AMBER: Simulated Annealing
(Mon Jun 25 2007 - 17:34:38 PDT)
Re: AMBER: remd/rdc's
(Sat Jun 23 2007 - 10:44:17 PDT)
Re: AMBER: 5 Ligands and 1 Protein
(Fri Jun 22 2007 - 08:05:28 PDT)
Re: AMBER: problems in adding ACE and NME group
(Wed Jun 20 2007 - 22:10:43 PDT)
Re: AMBER: sander core dumped during minimization
(Wed Jun 20 2007 - 22:16:11 PDT)
Re: AMBER: 5 Ligands and 1 Protein
(Wed Jun 20 2007 - 22:02:20 PDT)
Re: AMBER: 5 Ligands and 1 Protein
(Wed Jun 20 2007 - 17:16:27 PDT)
Re: AMBER: 5 Ligands and 1 Protein
(Wed Jun 20 2007 - 16:46:23 PDT)
Re: AMBER: problems in adding ACE and NME group
(Wed Jun 20 2007 - 08:41:43 PDT)
Re: AMBER: frcmod
(Mon Jun 18 2007 - 12:37:52 PDT)
Re: AMBER: problem with running rem on amber9
(Mon Jun 18 2007 - 11:22:01 PDT)
Re: AMBER: error due to exceeding left-hand side digital numbers in restart output
(Mon Jun 18 2007 - 11:06:16 PDT)
Re: AMBER: Amber Installation Error
(Mon Jun 18 2007 - 10:52:05 PDT)
Re: AMBER: isolated NTP
(Mon Jun 18 2007 - 08:39:06 PDT)
Re: AMBER: umbrella sampling dihedral restraint question
(Sun Jun 17 2007 - 22:46:16 PDT)
Re: AMBER: isolated NTP
(Sun Jun 17 2007 - 22:40:29 PDT)
Re: AMBER: MMPBSA-nmode .top question
(Sun Jun 17 2007 - 22:35:39 PDT)
Re: AMBER: Energy outputs in TI Approach
(Sat Jun 16 2007 - 08:19:23 PDT)
Re: AMBER: distance scan
(Sat Jun 16 2007 - 08:21:05 PDT)
Re: AMBER: frcmod
(Fri Jun 15 2007 - 14:43:48 PDT)
Re: AMBER: PDB problems
(Fri Jun 15 2007 - 13:24:44 PDT)
Re: AMBER: performance with implicit solvent
(Fri Jun 15 2007 - 13:18:31 PDT)
Re: AMBER: Amber Installation Error
(Fri Jun 15 2007 - 11:56:29 PDT)
Re: AMBER: Hbonds
(Fri Jun 15 2007 - 11:06:26 PDT)
Re: AMBER: Hbonds
(Wed Jun 13 2007 - 13:50:11 PDT)
Re: AMBER: problems using TIP4PBOX
(Wed Jun 13 2007 - 05:26:11 PDT)
Re: AMBER: frcmod
(Tue Jun 12 2007 - 14:34:35 PDT)
Re: AMBER: problem in installing amber9
(Tue Jun 12 2007 - 14:29:14 PDT)
Re: AMBER: dihedral parameters
(Tue Jun 12 2007 - 12:35:57 PDT)
Re: AMBER:
(Tue Jun 12 2007 - 12:29:06 PDT)
Re: AMBER: Installing on windows
(Sun Jun 10 2007 - 21:25:28 PDT)
Re: AMBER: problem installing amber7
(Sun Jun 10 2007 - 19:59:17 PDT)
Re: AMBER: Trouble on wiki about GAFF
(Fri Jun 08 2007 - 09:11:17 PDT)
Re: AMBER: Should we just vary one parameter at a time only for PMF calculations?
(Fri Jun 08 2007 - 08:55:12 PDT)
Re: AMBER: Trouble on wiki about GAFF
(Thu Jun 07 2007 - 20:31:12 PDT)
Re: AMBER: Restraining valence angles
(Wed Jun 06 2007 - 07:49:08 PDT)
Re: AMBER: dihedral simulation
(Sun Jun 03 2007 - 20:06:26 PDT)
Re: AMBER: pdb flie format
(Sun Jun 03 2007 - 20:04:58 PDT)
Re: AMBER: Reg restraint value obtained during umbrella sampling
(Sat Jun 02 2007 - 13:07:47 PDT)
Re: AMBER: Reg restraint value obtained during umbrella sampling
(Fri Jun 01 2007 - 18:19:35 PDT)
Re: AMBER: problem in installing amber9
(Fri Jun 01 2007 - 18:12:56 PDT)
Re: AMBER: BUG? Does TLEAP understand SPC/E water?
(Fri Jun 01 2007 - 11:39:42 PDT)
Re: AMBER: BUG? Does TLEAP understand SPC/E water?
(Fri Jun 01 2007 - 11:37:10 PDT)
Re: AMBER: rms in nmode
(Fri Jun 01 2007 - 08:50:27 PDT)
Re: AMBER: Question about separating bonded force
(Fri Jun 01 2007 - 08:42:29 PDT)
David Cerutti
AMBER: BUG? Does TLEAP understand SPC/E water?
(Fri Jun 01 2007 - 10:35:02 PDT)
David LeBard
Re: AMBER: Question about MPI-IO
(Mon Jun 11 2007 - 18:59:33 PDT)
AMBER: Question about MPI-IO
(Mon Jun 11 2007 - 13:58:54 PDT)
Re: AMBER: Hardware recommendations please
(Thu Jun 07 2007 - 11:31:21 PDT)
David Mobley
Re: AMBER: equilibrium constants via MMPBSA
(Mon Jun 04 2007 - 06:11:25 PDT)
Du, Shiyu
Re: AMBER: Installing amber9 in IBM P5?
(Wed Jun 13 2007 - 14:20:37 PDT)
Re: AMBER: Installing amber9 in IBM P5?
(Wed Jun 13 2007 - 10:52:11 PDT)
Re: AMBER: Installing amber9 in IBM P5?
(Tue Jun 12 2007 - 22:01:56 PDT)
AMBER: Installing amber9 in IBM P5?
(Tue Jun 12 2007 - 19:09:34 PDT)
Fenghui Fan
Re: AMBER: pdb flie format
(Sun Jun 03 2007 - 10:57:02 PDT)
Francesco Pietra
Re: AMBER: Problem with leaprc
(Sat Jun 30 2007 - 09:23:59 PDT)
Re: Fwd: Re: AMBER: make test serial
(Sat Jun 30 2007 - 09:18:38 PDT)
Fwd: Re: AMBER: make test serial
(Sat Jun 30 2007 - 06:42:56 PDT)
Fwd: Re: AMBER: make serial failure for xleap
(Sat Jun 30 2007 - 06:00:31 PDT)
Re: AMBER: make serial failure for xleap
(Sat Jun 30 2007 - 01:39:32 PDT)
AMBER: make serial failure for xleap
(Fri Jun 29 2007 - 14:05:52 PDT)
AMBER: Serial "make" failure
(Fri Jun 29 2007 - 13:59:42 PDT)
Re: AMBER: Serial "make" failure with xleap
(Fri Jun 29 2007 - 13:53:52 PDT)
AMBER: Fwd: Serial "make" failure with xleap
(Fri Jun 29 2007 - 10:26:54 PDT)
AMBER: Serial "make" failure with xleap
(Fri Jun 29 2007 - 10:17:39 PDT)
Fwd: RE: Re: AMBER: $AMBERHOME on PATH
(Thu Jun 28 2007 - 22:58:19 PDT)
RE: Re: AMBER: $AMBERHOME on PATH
(Thu Jun 28 2007 - 13:55:53 PDT)
Re: AMBER: Math libraries
(Thu Jun 28 2007 - 13:12:28 PDT)
RE: Re: AMBER: $AMBERHOME on PATH
(Thu Jun 28 2007 - 13:01:11 PDT)
RE: Re: AMBER: $AMBERHOME on PATH
(Thu Jun 28 2007 - 10:12:43 PDT)
RE: Re: AMBER: $AMBERHOME on PATH
(Thu Jun 28 2007 - 07:40:09 PDT)
AMBER: Math libraries
(Thu Jun 28 2007 - 02:56:45 PDT)
Re: AMBER: bugfix.all
(Wed Jun 27 2007 - 23:14:33 PDT)
AMBER: bugfix.all
(Wed Jun 27 2007 - 13:26:15 PDT)
Fwd: Re: AMBER: $AMBERHOME on PATH & compilations
(Wed Jun 27 2007 - 09:10:38 PDT)
Fwd: Re: AMBER: $AMBERHOME on PATH
(Wed Jun 27 2007 - 07:59:02 PDT)
Fwd: Re: AMBER: $AMBERHOME on PATH
(Wed Jun 27 2007 - 07:30:09 PDT)
Re: AMBER: $AMBERHOME on PATH
(Tue Jun 26 2007 - 13:15:11 PDT)
AMBER: $AMBERHOME on PATH
(Tue Jun 26 2007 - 10:38:35 PDT)
AMBER: environment variables
(Mon Jun 25 2007 - 08:51:05 PDT)
AMBER: Compile openmpi
(Thu Jun 14 2007 - 10:11:02 PDT)
Re: AMBER: antechamber/charges/conformation
(Mon Jun 11 2007 - 02:44:21 PDT)
AMBER: antechamber/charges/conformation
(Sun Jun 10 2007 - 00:02:15 PDT)
RE: AMBER: Compiling openmpi/icc/icpc
(Fri Jun 08 2007 - 23:04:45 PDT)
AMBER: Compiling openmpi/icc/icpc
(Fri Jun 08 2007 - 10:27:20 PDT)
Re: AMBER: Solvent models
(Fri Jun 01 2007 - 00:00:36 PDT)
Franck Vendeix
Re: AMBER: (no subject)
(Thu Jun 14 2007 - 06:32:54 PDT)
Fred Baba
AMBER: "FATAL: Atom xxx does not have a type."
(Tue Jun 26 2007 - 10:59:51 PDT)
AMBER: [ProblemSolved]Re: SANDER error: 'angles are not correct'
(Thu Jun 14 2007 - 10:08:47 PDT)
AMBER: SANDER error: 'angles are not correct'
(Wed Jun 13 2007 - 14:47:14 PDT)
FyD
Re: AMBER: S-nitrocysteine
(Wed Jun 13 2007 - 14:44:59 PDT)
Re: AMBER: antechamber/charges/conformation
(Mon Jun 11 2007 - 01:40:11 PDT)
Re: AMBER: Solvent models
(Fri Jun 01 2007 - 01:14:20 PDT)
Giacomo Bastianelli
AMBER: Charge not integral. Head-to-tail cyclic peptides
(Mon Jun 18 2007 - 06:55:46 PDT)
Guillaume Renvez
AMBER: H bond
(Tue Jun 19 2007 - 01:18:45 PDT)
AMBER: [Fwd: Tr: H bonds]
(Wed Jun 13 2007 - 05:37:20 PDT)
AMBER: hydrogen bond
(Wed Jun 13 2007 - 01:49:22 PDT)
gurpreet singh
Re: AMBER: Re: Strange shape in my MD simulations
(Wed Jun 20 2007 - 00:58:03 PDT)
Re: AMBER: building water box with desired number of molecules
(Tue Jun 12 2007 - 02:09:10 PDT)
Gustavo Seabra
RE: AMBER: Offending restraints????
(Tue Jun 26 2007 - 07:09:18 PDT)
RE: AMBER: problems in adding ACE and NME group
(Wed Jun 20 2007 - 07:14:26 PDT)
Re: AMBER: Installing on windows
(Mon Jun 11 2007 - 11:56:48 PDT)
Re: AMBER: Installing on windows
(Mon Jun 11 2007 - 08:41:05 PDT)
Re: AMBER: Installing on windows
(Mon Jun 11 2007 - 06:59:29 PDT)
Re: AMBER: Installing on windows
(Sun Jun 10 2007 - 19:20:05 PDT)
Re: AMBER: Installing on windows
(Sun Jun 10 2007 - 17:28:01 PDT)
Hannes Loeffler
Re: AMBER: Reply regarding PCA with ptraj and IED
(Tue Jun 19 2007 - 19:43:21 PDT)
Hayden Eastwood
RE: AMBER: Simulated Annealing
(Tue Jun 26 2007 - 02:14:57 PDT)
Henk Meij
Re: AMBER: problem in installing amber9 SOLVED!
(Wed Jun 13 2007 - 13:43:06 PDT)
Re: AMBER: problem in installing amber9
(Wed Jun 13 2007 - 13:32:18 PDT)
Re: AMBER: amber9 compile problem
(Tue Jun 12 2007 - 11:30:54 PDT)
Re: AMBER: problem in installing amber9
(Wed Jun 13 2007 - 10:30:59 PDT)
Re: AMBER: problem in installing amber9
(Wed Jun 13 2007 - 06:41:27 PDT)
Re: AMBER: amber9 compile problem
(Tue Jun 12 2007 - 07:13:01 PDT)
Re: AMBER: amber9 compile problem
(Mon Jun 11 2007 - 12:04:05 PDT)
Re: AMBER: amber9 compile problem
(Mon Jun 11 2007 - 06:51:12 PDT)
Re: AMBER: amber9 compile problem
(Mon Jun 11 2007 - 06:20:17 PDT)
hmeij.wesleyan.edu
AMBER: amber9 compile problem
(Sun Jun 10 2007 - 06:58:54 PDT)
Ileana Stoica
AMBER: Internal dielectric and MMPBSA
(Tue Jun 12 2007 - 04:32:17 PDT)
Ilyas Yildirim
AMBER: Does Chimera support AMBER file formats?
(Tue Jun 26 2007 - 16:58:56 PDT)
AMBER: Energy outputs in TI Approach
(Fri Jun 15 2007 - 22:03:26 PDT)
Re: AMBER: PDB problems
(Fri Jun 15 2007 - 15:30:45 PDT)
Re: AMBER: .lib files
(Fri Jun 15 2007 - 12:50:34 PDT)
Re: AMBER: Saving a structuring from trajectory
(Fri Jun 15 2007 - 11:59:50 PDT)
Re: AMBER: Dihedral driver
(Thu Jun 07 2007 - 13:16:15 PDT)
RE: AMBER: extracting starting structures from equilibration trajectory
(Thu Jun 07 2007 - 12:58:19 PDT)
RE: AMBER: extracting starting structures from equilibration trajectory
(Thu Jun 07 2007 - 12:54:06 PDT)
Re: AMBER: extracting starting structures from equilibration trajectory
(Thu Jun 07 2007 - 11:14:18 PDT)
In Hee Park
AMBER: rst overflow for implicit REMD
(Tue Jun 26 2007 - 07:37:45 PDT)
j j
Re: AMBER: Re: Fwd: joshua
(Wed Jun 20 2007 - 06:01:00 PDT)
AMBER: Re: Fwd: joshua
(Wed Jun 20 2007 - 04:27:43 PDT)
Re: AMBER: ff99 vs ff99SB for RNA
(Thu Jun 14 2007 - 08:30:21 PDT)
Re: AMBER: Trouble on wiki about GAFF
(Fri Jun 08 2007 - 00:14:13 PDT)
AMBER: Trouble on wiki about GAFF
(Thu Jun 07 2007 - 16:29:37 PDT)
Re: AMBER: pdb flie format
(Mon Jun 04 2007 - 14:10:32 PDT)
Jardas sucuriba
RE: AMBER: dihedral parameters
(Tue Jun 12 2007 - 19:18:12 PDT)
AMBER: dihedral parameters
(Mon Jun 11 2007 - 15:13:36 PDT)
Jason Brown
AMBER: Unexpected Failure in XLeap
(Tue Jun 26 2007 - 11:45:14 PDT)
Jed W Pitera
Re: AMBER: Installing amber9 in IBM P5?
(Wed Jun 13 2007 - 08:04:31 PDT)
Jena M
AMBER: PMF calculation
(Mon Jun 25 2007 - 12:59:02 PDT)
Jeremy Weedon
Re: AMBER: Hardware recommendations please
(Thu Jun 07 2007 - 08:24:54 PDT)
AMBER: Hardware recommendations please
(Wed Jun 06 2007 - 09:15:16 PDT)
Jerome.GOLEBIOWSKI.unice.fr
Re: AMBER: How to fix two angle but do umberlla sampling for distance?
(Thu Jun 07 2007 - 08:38:26 PDT)
Jianmin Feng
Re: AMBER: Installation Question
(Mon Jun 04 2007 - 07:33:20 PDT)
jitrayut jitonnom
AMBER: MM-GBSA: pairwise decompose energy calculation can't read snapshot_com.all.out
(Sun Jun 03 2007 - 09:08:16 PDT)
Joe Nolan
Re: AMBER: Amber Installation Error
(Mon Jun 18 2007 - 12:08:48 PDT)
Re: AMBER: Amber Installation Error
(Mon Jun 18 2007 - 08:52:16 PDT)
RE: AMBER: Amber Installation Error
(Mon Jun 18 2007 - 07:34:12 PDT)
john chen
AMBER: implementation of GB model in AMBER
(Sun Jun 17 2007 - 05:49:24 PDT)
AMBER: problems using TIP4PBOX
(Wed Jun 13 2007 - 03:53:30 PDT)
Jojart Balazs
AMBER: MM-PBSA POPC/TIP3P/GPCR/LIGAND
(Sat Jun 30 2007 - 11:25:49 PDT)
Joseph Maxwell
AMBER: Simulated Annealing
(Mon Jun 25 2007 - 16:28:14 PDT)
Julien Michel
Re: AMBER: equilibrium constants via MMPBSA
(Fri Jun 01 2007 - 09:48:55 PDT)
khn _
AMBER: radial distribution function in ptraj
(Fri Jun 22 2007 - 18:25:05 PDT)
Re: AMBER: pair distribution function
(Sun Jun 17 2007 - 01:25:56 PDT)
AMBER: pair distribution function
(Thu Jun 14 2007 - 16:20:47 PDT)
AMBER: g(r)
(Wed Jun 13 2007 - 09:43:25 PDT)
Kijeong Kwac
AMBER: performance with implicit solvent
(Fri Jun 15 2007 - 13:02:49 PDT)
kkirschn.hamilton.edu
AMBER: Amber9's sander.MPI on x86_64
(Mon Jun 04 2007 - 10:13:51 PDT)
Laurent Chiche
Re: AMBER: Charge not integral. Head-to-tail cyclic peptides
(Mon Jun 18 2007 - 07:37:53 PDT)
Liang, Lei
Re: AMBER: Problem about prepare the model when running antechamber
(Mon Jun 04 2007 - 14:03:45 PDT)
Re: AMBER: Problem about prepare the model when running antechamber
(Mon Jun 04 2007 - 14:02:04 PDT)
AMBER: Problem about prepare the model when running antechamber
(Mon Jun 04 2007 - 13:04:36 PDT)
lishan yao
AMBER: dihedral simulation
(Sun Jun 03 2007 - 08:49:33 PDT)
M. L. Dodson
Re: Fwd: Re: AMBER: make test serial
(Sat Jun 30 2007 - 09:30:05 PDT)
Re: AMBER: make serial failure for xleap
(Fri Jun 29 2007 - 15:33:37 PDT)
Re: Fwd: RE: Re: AMBER: $AMBERHOME on PATH
(Fri Jun 29 2007 - 06:34:08 PDT)
Re: AMBER: bugfix.all
(Wed Jun 27 2007 - 13:52:07 PDT)
Re: AMBER: set up system solution with 3 different components, each with multiple copies
(Tue Jun 26 2007 - 08:27:41 PDT)
Re: AMBER: box size bomb in QMMM calculation
(Wed Jun 13 2007 - 02:43:52 PDT)
Re: AMBER: box size bomb in QMMM calculation
(Tue Jun 12 2007 - 16:23:50 PDT)
AMBER: box size bomb in QMMM calculation
(Tue Jun 12 2007 - 12:46:00 PDT)
Marc Baaden
Re: AMBER: NMR vs. X-ray structures
(Mon Jun 11 2007 - 22:51:21 PDT)
Marie Brut
AMBER: rms in nmode
(Fri Jun 01 2007 - 00:22:22 PDT)
Mark Williamson
Re: AMBER: Improving pmemd parallel scaling
(Thu Jun 28 2007 - 09:19:06 PDT)
Re: AMBER: Amber Installation Error
(Mon Jun 18 2007 - 11:19:27 PDT)
Re: AMBER: Amber Installation Error
(Mon Jun 18 2007 - 08:35:18 PDT)
Re: AMBER: amber9 compile problem
(Mon Jun 11 2007 - 06:28:30 PDT)
Re: AMBER: amber9 compile problem
(Sun Jun 10 2007 - 09:03:28 PDT)
Matthew Danielson
AMBER: MMPBSA-nmode .top question
(Fri Jun 15 2007 - 14:11:52 PDT)
Mattias Blomberg
AMBER: prepin for metal centre
(Mon Jun 25 2007 - 11:17:02 PDT)
mbrut.laas.fr
AMBER: Hbonds
(Thu Jun 14 2007 - 00:45:25 PDT)
AMBER: Hbonds
(Wed Jun 13 2007 - 05:54:52 PDT)
McElheny, Dan
Re: AMBER: remd/rdc's
(Mon Jun 25 2007 - 09:12:20 PDT)
AMBER: remd/rdc's
(Fri Jun 22 2007 - 11:04:59 PDT)
Melinda Layten
Re: AMBER: problems in adding ACE and NME group
(Wed Jun 27 2007 - 09:01:00 PDT)
Re: AMBER: problems in adding ACE and NME group
(Tue Jun 26 2007 - 13:02:12 PDT)
Re: AMBER: Charge not integral. Head-to-tail cyclic peptides
(Mon Jun 18 2007 - 07:28:57 PDT)
Re: AMBER: Atom types
(Tue Jun 12 2007 - 11:16:34 PDT)
Miguel Ferreira
AMBER: distance scan
(Sat Jun 16 2007 - 03:25:59 PDT)
AMBER: distance scan
(Sat Jun 16 2007 - 03:16:15 PDT)
Mingfeng Yang
Re: AMBER: Does Chimera support AMBER file formats?
(Tue Jun 26 2007 - 17:12:53 PDT)
Mr Defang Ouyang
AMBER: pdb flie format
(Sun Jun 03 2007 - 05:53:08 PDT)
nag raj
AMBER: Regarding conversion of CHARMM force field parameters to AMBER parameters.
(Wed Jun 13 2007 - 20:58:22 PDT)
Nicolas Lux Fawzi
Re: AMBER: set up system solution with 3 different components, each with multiple copies
(Tue Jun 26 2007 - 08:16:54 PDT)
AMBER: ptray segfault: vector out
(Thu Jun 21 2007 - 12:19:49 PDT)
AMBER: set up system solution with 3 different components, each with multiple copies
(Thu Jun 21 2007 - 08:56:57 PDT)
Nikola Trbovic
RE: AMBER: extracting starting structures from equilibration trajectory
(Thu Jun 07 2007 - 13:07:48 PDT)
RE: AMBER: extracting starting structures from equilibration trajectory
(Thu Jun 07 2007 - 12:54:35 PDT)
RE: AMBER: extracting starting structures from equilibration trajectory
(Thu Jun 07 2007 - 12:33:35 PDT)
AMBER: extracting starting structures from equilibration trajectory
(Thu Jun 07 2007 - 11:06:15 PDT)
RE: AMBER: problem running parallel jobs
(Thu Jun 07 2007 - 07:58:47 PDT)
RE: AMBER: problem running parallel jobs
(Wed Jun 06 2007 - 11:43:14 PDT)
RE: AMBER: problem running parallel jobs
(Wed Jun 06 2007 - 10:31:16 PDT)
AMBER: problem running parallel jobs
(Tue Jun 05 2007 - 13:43:02 PDT)
Pankaj R. Daga
AMBER: PBSA Error
(Tue Jun 26 2007 - 07:03:41 PDT)
paula lario
AMBER: amber94 parameters for cholesterol
(Thu Jun 07 2007 - 15:57:38 PDT)
Pavan G
AMBER: Re: ff02 and ff03 parameters
(Mon Jun 25 2007 - 12:34:30 PDT)
Re: AMBER: Re: Strange shape in my MD simulations
(Tue Jun 19 2007 - 11:37:18 PDT)
Re: AMBER: Re: Strange shape in my MD simulations
(Tue Jun 19 2007 - 07:34:45 PDT)
Re: AMBER: Re: Strange shape in my MD simulations
(Tue Jun 19 2007 - 07:09:48 PDT)
AMBER: Re: Strange shape in my MD simulations
(Tue Jun 19 2007 - 05:47:58 PDT)
Phineus Markwick
Re: AMBER: Sander Error
(Fri Jun 29 2007 - 08:48:04 PDT)
Re: AMBER: Sander Error
(Fri Jun 29 2007 - 08:45:18 PDT)
Piotr Cieplak
Re: AMBER: unres
(Mon Jun 18 2007 - 17:00:47 PDT)
Praveena Gopal
AMBER: Amber: Number density profile, pucker..reg
(Mon Jun 11 2007 - 23:17:37 PDT)
priya priya
Re: AMBER: radius of gyration
(Fri Jun 29 2007 - 06:14:49 PDT)
Re: AMBER: radius of gyration
(Fri Jun 29 2007 - 02:16:24 PDT)
Re: AMBER: problems in adding ACE and NME group
(Mon Jun 25 2007 - 07:01:52 PDT)
AMBER: how to calculate energy of the peptide
(Mon Jun 25 2007 - 06:56:54 PDT)
Re: AMBER: radius of gyration
(Mon Jun 25 2007 - 05:57:39 PDT)
Re: AMBER: radius of gyration
(Mon Jun 25 2007 - 05:59:39 PDT)
Re: AMBER: radius of gyration
(Fri Jun 22 2007 - 08:23:03 PDT)
AMBER: radius of gyration
(Fri Jun 22 2007 - 08:10:36 PDT)
Re: AMBER: problem with running rem on amber9
(Mon Jun 18 2007 - 08:25:37 PDT)
Re: AMBER: problem with running rem on amber9
(Mon Jun 18 2007 - 08:02:55 PDT)
Re: AMBER: problem with running rem on amber9
(Mon Jun 18 2007 - 05:59:38 PDT)
AMBER: problem with running rem on amber9
(Mon Jun 18 2007 - 05:41:02 PDT)
AMBER: Using position restraints during constant pressure equilibration
(Tue Jun 12 2007 - 06:17:44 PDT)
RE: AMBER: problem with starting REM on amber9
(Wed Jun 06 2007 - 00:07:14 PDT)
Re: AMBER: problem with starting REM on amber9
(Tue Jun 05 2007 - 07:21:12 PDT)
AMBER: problem with starting REM on amber9
(Tue Jun 05 2007 - 06:32:50 PDT)
Robert Duke
Re: AMBER: Improving pmemd parallel scaling
(Thu Jun 28 2007 - 15:27:24 PDT)
Re: AMBER: configure question
(Thu Jun 28 2007 - 15:18:53 PDT)
Re: AMBER: Math libraries
(Thu Jun 28 2007 - 05:15:07 PDT)
Re: AMBER: Limitation in number of atoms/residues
(Fri Jun 22 2007 - 05:37:30 PDT)
Re: AMBER: problem in installing amber9
(Wed Jun 13 2007 - 12:11:40 PDT)
Re: AMBER: amber9 compile problem
(Wed Jun 13 2007 - 11:07:37 PDT)
Re: AMBER: Question about MPI-IO
(Mon Jun 11 2007 - 14:51:56 PDT)
Re: AMBER: problem running parallel jobs
(Wed Jun 06 2007 - 12:08:08 PDT)
Re: AMBER: problem running parallel jobs
(Wed Jun 06 2007 - 11:03:19 PDT)
Robert Konecny
Re: AMBER: problem running parallel jobs
(Tue Jun 05 2007 - 14:34:44 PDT)
Roberto Veiga
AMBER: Algorithm for integration of equations of motion
(Wed Jun 20 2007 - 11:55:45 PDT)
AMBER: Questions about how ptraj calculates solvent shells
(Mon Jun 18 2007 - 11:46:59 PDT)
Re: AMBER: Once again, "distance" command in ptraj
(Tue Jun 05 2007 - 02:20:27 PDT)
Re: AMBER: RESTRAINTMASK
(Mon Jun 04 2007 - 13:09:23 PDT)
AMBER: Once again, "distance" command in ptraj
(Mon Jun 04 2007 - 09:47:01 PDT)
Re: AMBER: Once again, "distance" command in ptraj
(Mon Jun 04 2007 - 07:20:34 PDT)
AMBER: Once again, "distance" command in ptraj
(Mon Jun 04 2007 - 07:06:19 PDT)
AMBER: "distance" command in ptraj
(Sat Jun 02 2007 - 04:19:42 PDT)
Ross Walker
RE: Fwd: Re: AMBER: make test serial
(Sat Jun 30 2007 - 10:00:13 PDT)
RE: AMBER: Sander Error
(Fri Jun 29 2007 - 20:42:50 PDT)
RE: AMBER: Sander Error
(Fri Jun 29 2007 - 09:28:44 PDT)
RE: AMBER: Sander Error
(Fri Jun 29 2007 - 08:40:08 PDT)
RE: AMBER: sander MPI fails included tests
(Thu Jun 28 2007 - 21:17:50 PDT)
RE: AMBER: sander MPI fails included tests
(Thu Jun 28 2007 - 14:06:19 PDT)
RE: Re: AMBER: $AMBERHOME on PATH
(Thu Jun 28 2007 - 10:58:09 PDT)
RE: AMBER: configure question
(Thu Jun 28 2007 - 10:06:40 PDT)
RE: Problems with Ifort 9.1.047 on Altix (Was: RE: Re: AMBER: $AMBERHOME on PATH)
(Thu Jun 28 2007 - 09:53:44 PDT)
RE: Re: AMBER: $AMBERHOME on PATH
(Thu Jun 28 2007 - 08:33:20 PDT)
RE: AMBER: bugfix.all
(Wed Jun 27 2007 - 14:19:32 PDT)
RE: Re: AMBER: $AMBERHOME on PATH
(Wed Jun 27 2007 - 09:11:34 PDT)
RE: AMBER: problems in adding ACE and NME group
(Wed Jun 27 2007 - 09:02:10 PDT)
RE: AMBER: sander MPI fails included tests
(Tue Jun 26 2007 - 15:06:30 PDT)
RE: AMBER: sander MPI fails included tests
(Mon Jun 25 2007 - 19:08:22 PDT)
RE: AMBER: environment variables
(Mon Jun 25 2007 - 12:43:39 PDT)
RE: AMBER: sander MPI fails included tests
(Mon Jun 25 2007 - 11:17:34 PDT)
RE: AMBER: SPCFW water: angle problems in leap
(Sat Jun 23 2007 - 09:47:25 PDT)
RE: AMBER: Algorithm for integration of equations of motion
(Wed Jun 20 2007 - 12:38:36 PDT)
RE: AMBER: Re: Strange shape in my MD simulations
(Wed Jun 20 2007 - 08:27:37 PDT)
RE: AMBER: How to add semi-experience parameter in divcon?
(Tue Jun 19 2007 - 08:44:59 PDT)
RE: AMBER: Re: Strange shape in my MD simulations
(Tue Jun 19 2007 - 08:42:08 PDT)
RE: AMBER: Amber Installation Error
(Fri Jun 15 2007 - 12:25:28 PDT)
RE: AMBER: Installing amber9 in IBM P5?
(Wed Jun 13 2007 - 16:39:11 PDT)
RE: AMBER: problem in installing amber9
(Wed Jun 13 2007 - 11:29:04 PDT)
RE: AMBER: problem in installing amber9
(Wed Jun 13 2007 - 08:25:19 PDT)
RE: AMBER: Installing amber9 in IBM P5?
(Wed Jun 13 2007 - 08:17:45 PDT)
RE: AMBER: problem in installing amber9
(Tue Jun 12 2007 - 20:44:16 PDT)
RE: AMBER: box size bomb in QMMM calculation
(Tue Jun 12 2007 - 20:39:35 PDT)
RE: AMBER: Installing amber9 in IBM P5?
(Tue Jun 12 2007 - 20:34:33 PDT)
RE: AMBER: box size bomb in QMMM calculation
(Tue Jun 12 2007 - 15:29:26 PDT)
RE: AMBER: amber9 compile problem
(Tue Jun 12 2007 - 10:04:54 PDT)
RE: AMBER: Question about MPI-IO
(Mon Jun 11 2007 - 16:16:02 PDT)
RE: AMBER: amber9 compile problem
(Mon Jun 11 2007 - 15:06:30 PDT)
RE: AMBER: amber9 compile problem
(Mon Jun 11 2007 - 09:16:58 PDT)
RE: AMBER: amber9 compile problem
(Sun Jun 10 2007 - 10:15:18 PDT)
RE: AMBER: Compiling openmpi/icc/icpc
(Fri Jun 08 2007 - 14:30:02 PDT)
AMBER: RE: Need your gudiance
(Fri Jun 08 2007 - 14:24:47 PDT)
AMBER: RE: Need your gudiance
(Fri Jun 08 2007 - 14:18:23 PDT)
RE: AMBER: Amber9's sander.MPI on x86_64
(Wed Jun 06 2007 - 09:18:33 PDT)
RE: AMBER: REMD and mpiexec
(Wed Jun 06 2007 - 09:06:06 PDT)
RE: AMBER: problem with starting REM on amber9
(Tue Jun 05 2007 - 08:36:07 PDT)
RE: AMBER: Problem about prepare the model when running antechamber
(Mon Jun 04 2007 - 13:47:24 PDT)
RE: AMBER: Amber9's sander.MPI on x86_64
(Mon Jun 04 2007 - 11:20:43 PDT)
AMBER: RE: process_mdout.perl
(Fri Jun 01 2007 - 12:47:04 PDT)
RE: AMBER: BUG? Does TLEAP understand SPC/E water?
(Fri Jun 01 2007 - 11:23:35 PDT)
Russell Green
AMBER: how to stop ptraj atom renumbering
(Wed Jun 27 2007 - 13:25:53 PDT)
saccenti.cerm.unifi.it
Re: AMBER: Offending restraints????
(Wed Jun 27 2007 - 02:33:16 PDT)
Re: AMBER: Offending restraints????
(Tue Jun 26 2007 - 08:36:44 PDT)
Re: AMBER: Offending restraints????
(Tue Jun 26 2007 - 08:34:37 PDT)
Re: AMBER: Offending restraints????
(Tue Jun 26 2007 - 07:34:05 PDT)
RE: AMBER: Offending restraints????
(Tue Jun 26 2007 - 07:23:45 PDT)
AMBER: Offending restraints????
(Tue Jun 26 2007 - 06:48:21 PDT)
Saiful Islam
AMBER: amber7 and xleap
(Sat Jun 30 2007 - 06:14:21 PDT)
AMBER: problem installing amber7
(Sun Jun 10 2007 - 07:55:19 PDT)
Sally Pias
Re: AMBER: testing protein stability
(Fri Jun 22 2007 - 14:57:27 PDT)
AMBER: testing protein stability
(Thu Jun 21 2007 - 22:24:58 PDT)
THANKS -- Re: AMBER: NMR vs. X-ray structures
(Wed Jun 13 2007 - 21:33:06 PDT)
AMBER: NMR vs. X-ray structures
(Mon Jun 11 2007 - 22:22:19 PDT)
Sandeep Kaushik
Re: AMBER: RESTRAINTMASK
(Sun Jun 03 2007 - 22:38:21 PDT)
Sascha Rehm
Re: AMBER: Limitation in number of atoms/residues
(Fri Jun 22 2007 - 06:46:05 PDT)
AMBER: Limitation in number of atoms/residues
(Fri Jun 22 2007 - 03:47:35 PDT)
saurabh agrawal
AMBER: MM-PBSA calcuation for drug dna complex in 2:1 ratio
(Tue Jun 12 2007 - 06:25:09 PDT)
Scott Brozell
Re: AMBER: 5 Ligands and 1 Protein
(Wed Jun 20 2007 - 17:25:05 PDT)
Sean Rathlef
AMBER: equilibrium constants via MMPBSA
(Fri Jun 01 2007 - 09:57:46 PDT)
Sergio Wong
RE: AMBER: sander MPI fails included tests
(Thu Jun 28 2007 - 17:05:08 PDT)
RE: AMBER: sander MPI fails included tests
(Thu Jun 28 2007 - 12:14:02 PDT)
RE: AMBER: sander MPI fails included tests
(Tue Jun 26 2007 - 13:58:04 PDT)
RE: AMBER: sander MPI fails included tests
(Mon Jun 25 2007 - 12:06:21 PDT)
AMBER: sander MPI fails included tests
(Mon Jun 25 2007 - 10:20:55 PDT)
Seth Hayik
Re: AMBER: How to add semi-experience parameter in divcon?
(Tue Jun 19 2007 - 09:15:03 PDT)
Seth Lilavivat
AMBER: Saving a structuring from trajectory
(Fri Jun 15 2007 - 11:42:12 PDT)
AMBER: GB vs. Invacuo Energies
(Wed Jun 06 2007 - 07:38:32 PDT)
Shawn yy
AMBER: Question about separating bonded force
(Fri Jun 01 2007 - 08:31:04 PDT)
Sophie Barbe
AMBER: Nucleic acid analyse : base pair parameters, backbone torsions...
(Mon Jun 04 2007 - 14:16:48 PDT)
Stern, Julie
AMBER: shell model MD
(Mon Jun 18 2007 - 09:48:54 PDT)
Steve Seibold
RE: AMBER: isolated NTP
(Mon Jun 18 2007 - 05:20:21 PDT)
AMBER: isolated NTP
(Fri Jun 15 2007 - 07:07:16 PDT)
AMBER:
(Tue Jun 12 2007 - 09:21:15 PDT)
AMBER:
(Mon Jun 11 2007 - 10:31:47 PDT)
Steve Spronk
AMBER: Reply regarding PCA with ptraj and IED
(Tue Jun 19 2007 - 14:00:37 PDT)
Steve Young
RE: AMBER: configure question
(Fri Jun 29 2007 - 07:31:19 PDT)
AMBER: configure question
(Thu Jun 28 2007 - 08:52:48 PDT)
RE: AMBER: REMD and mpiexec
(Thu Jun 07 2007 - 10:47:37 PDT)
AMBER: REMD and mpiexec
(Tue Jun 05 2007 - 17:53:14 PDT)
Re: AMBER: Amber9's sander.MPI on x86_64
(Tue Jun 05 2007 - 10:23:43 PDT)
Steven Winfield
Re: AMBER: xleap on cygwin
(Tue Jun 12 2007 - 09:45:09 PDT)
Stéphane Téletchéa
Re: AMBER: Nucleic acid analyse : base pair parameters, backbone torsions...
(Tue Jun 05 2007 - 01:01:10 PDT)
Syed Tarique Moin
Re: AMBER: explanation to edit and use the script
(Wed Jun 20 2007 - 02:33:15 PDT)
AMBER: explanation to edit and use the script
(Sun Jun 17 2007 - 21:26:38 PDT)
Re: AMBER: problem in installing amber9
(Tue Jun 12 2007 - 01:04:57 PDT)
AMBER: problem in installing amber9
(Fri Jun 01 2007 - 00:10:44 PDT)
Taryn Hartley
AMBER: PDB problems
(Fri Jun 15 2007 - 13:17:13 PDT)
AMBER: .lib files
(Fri Jun 15 2007 - 12:42:16 PDT)
RE: AMBER: Atom types
(Tue Jun 12 2007 - 10:25:30 PDT)
AMBER:
(Fri Jun 08 2007 - 11:39:15 PDT)
Thomas Cheatham
Re: AMBER: Nucleic acid analyse : base pair parameters, backbone torsions...
(Mon Jun 04 2007 - 22:04:34 PDT)
Re: AMBER: Once again, "distance" command in ptraj
(Mon Jun 04 2007 - 21:22:45 PDT)
Thomas Cheatham III
Re: AMBER: radius of gyration
(Fri Jun 22 2007 - 09:30:01 PDT)
Re: AMBER: pair distribution function
(Thu Jun 14 2007 - 16:41:51 PDT)
Re: AMBER: ff99 vs ff99SB for RNA
(Thu Jun 14 2007 - 09:17:46 PDT)
Re: AMBER: Question about MPI-IO
(Mon Jun 11 2007 - 14:40:08 PDT)
Thomas Hofer
AMBER: SPCFW water: angle problems in leap
(Sat Jun 23 2007 - 09:02:32 PDT)
Thomas Steinbrecher
Re: AMBER: Amber9's sander.MPI on x86_64
(Mon Jun 04 2007 - 10:26:55 PDT)
Re: AMBER: BUG? Does TLEAP understand SPC/E water?
(Fri Jun 01 2007 - 11:30:54 PDT)
Urszula Uciechowska
AMBER: LES problem
(Mon Jun 04 2007 - 06:34:42 PDT)
Vijay Manickam Achari
AMBER: building water box with desired number of molecules
(Tue Jun 12 2007 - 00:33:21 PDT)
Vlad Cojocaru
Re: AMBER: LES problem
(Tue Jun 05 2007 - 05:41:19 PDT)
Wei Chen
AMBER: metal ions
(Tue Jun 12 2007 - 14:20:26 PDT)
AMBER: Metal ions in GBSA
(Tue Jun 12 2007 - 06:13:36 PDT)
Re: AMBER: xleap on cygwin
(Tue Jun 12 2007 - 06:06:45 PDT)
yen li
Re: AMBER: Problem with leaprc
(Sat Jun 30 2007 - 07:11:47 PDT)
AMBER: Problem with leaprc
(Thu Jun 28 2007 - 20:27:52 PDT)
zgleo
AMBER: sander core dumped during minimization
(Wed Jun 20 2007 - 18:51:04 PDT)
Last message date
:
Sun Jul 01 2007 - 06:07:55 PDT
Archived on
: Wed Dec 25 2024 - 05:53:38 PST
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