On Thu, Jun 21, 2007, backy wrote:
> If there is a need in placing the whole ACE and NME group, how should I
> input their initial coordinations?
This is a very rare thing to do, and Amber admitedly doesn't make it very
easy. It isn't something I would recommend just "for practice".
You might use a homology-modeling program to add alanine at both ends, then
delete the atoms you don't need, and change the residue names to ACE and
NME.
....dac
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Received on Sun Jun 24 2007 - 06:07:22 PDT
