Dear Amber Users,
I want to calculate binding free energy for dna drug
complex in 2:1 ratio. How do I calculate it.
Does Giving 2 at Ligand option in MM-pbsa script is
correct way for free energy calculation?
because in the mm-pbsa script following line is
written.
"LIGAND - Set to 1 if free energy difference is
calculated."
I am not understanding how to solve the problem.
Any suggestion will be of great importance for me.
saurabh
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Received on Wed Jun 13 2007 - 06:07:31 PDT
