On Tue, Jun 26, 2007, Fred Baba wrote:
> UN2 = loadpdb "10gs_protein.pdb"
> loadamberprep 10gs_protein.prepin
Do the above two commands in the opposite order: you need to load the prepin
file before loading the pdb file
> # Can only make the prep file with Leap.
I don't understand this exactly: how did you create the prepin file in leap?
How big a molecule are you trying to make a prepin file for? A prepin file
would ordinarily be for a single residue, not for an entire protein.
....dac
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Received on Wed Jun 27 2007 - 06:07:42 PDT
