Dear Ross:
Thanks. make (serial) exited with errors aboul leap.
--- Ross Walker <ross.rosswalker.co.uk> wrote:
> Hi Francesco,
>
> > ./configure -static ifort_x86_64
> > ./configure: line 1264: config.h: Permission denied
>
> The issue is one of Unix file permissions. I suspect that you don't own the
> amber9 directory and all sub files. You have one of two options, either
> chown the directory to yourself and then repeat the installation or do the
> installation as root - which you tried...
>
> If you run the installation as root you have to make sure that root picks up
> all the environment variables etc.
Particularly with my system. being the only user, I tend to put as much as
possible into my .bashrc.
>Thus it is probably easier to just chown
> everything to you.
>
> su -
> cd /path_to_amber9/
> cd ../
> chown -R username amber9 (where username is your username)
> exit (quits as root and should be back as your
> user)
Other than chown, also run
chgrp -R username amber9
>
> cd $AMBERHOME/src/
I removed previous config.h
> ./configure -static ifort_x86_64
This created new config.h
> make clean
> make
After a long session it exited with Error 2
Those errors that I can see on the screen comprise:
WcActCB.c:1448: error: expected declaration specifiers before XEvent.
WcActCB.c:1448: error: expected declaration specifiers before Cardinal.
WcActCB.c: In function WcDynamicActionACT:
WcActCB.c:1450: error: expected declaration specifiers before Widget.
WcActCB.c:1450: error: expected declaration specifiers before XEvent.
WcActCB.c:1450: error: expected declaration specifiers before Cardinal.
WcActBC.c: In function WcDynamicCallbackACT:
WcActCB.c:1452: error: expected declaration specifiers before Widget.
WcActCB.c:1452: error: expected declaration specifiers before XEvent.
WcActCB.c:1452: error: expected declaration specifiers before Cardinal.
WcActBC.c: In function WcRegisterWcActions:
WcActCB.c:1461: error: expected declaration specifiers before XtAppContext.
WcActCB.c:1463: error: expected = , , , ;, asm or __attribute__ befor WcActions
WcActCB.c:1463 error: WcActions undeclared (first use in this function).
WcActCB.c:1463 error: expected expression before ] token.
WcActCB.c:1536: error: expected = , , , ;, asm or __attribute__ before already.
WcActCB.c:1536: error: already undeclared (first use in this function).
make[2]: *** [WcActB.o] Error 1.
make[2]: Leaving dir '/usr/local/amber9/src/leap/src/Wc'
make [1]: *** [install] Error 2
make[1]: Leaving dir '/usr/local/amber9/src/leap'
make: *** [serial] Error 2
_____________________--
If relevant, I have seen during the process calling "gcc" and "g++" (for
openmpi I have used intel for both fortran, C and C++).
__________________
I don't see any log file in either amber9 or its subdir src. Should I run any
test after such exit?
>
> If you get ifort not found then make sure you have modified your ~/.bashrc
> or ~/.cshrc (depending on your shell) to source
> /opt/intel/fce/9.1.036/bin/ifortvars.sh (or .csh if c shell)
All intel compilers are activated from .bashrc.
Then
cd $AMBEROME/test
make test.serial
All PASSED except leap:
cd leap: ./Run.tleap
Error: ./tleap -> ../../exe/teLeap does not exit
make: *** [test.leap] Error 1
__________________-----
What do you suggest I should do? Can the machine be shutdown and restartd
tomorrow?
Thanks
francesco
>
> All the best
> Ross
>
> /\
> \/
> |\oss Walker
>
> | HPC Consultant and Staff Scientist |
> | San Diego Supercomputer Center |
> | Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
> | http://www.rosswalker.co.uk | PGP Key available on request |
>
> Note: Electronic Mail is not secure, has no guarantee of delivery, may not
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Received on Sun Jul 01 2007 - 06:07:24 PDT
