On Fri, Jun 01, 2007, Syed Tarique Moin wrote:
> I installed amber9 but not looking fine, i have a
> problem in xleap, that when i make initial files, like
> using the command
>
> solvatebox or addions the solvent surrounding the
> solute not well file (file attached name as
> amber9.jpg)
>
> but its looking right with amber7.jpg (for the
> comparison) surrounding the solute very well by the
> solvent.
>
Please see if this helps:
http://amber.ch.ic.ac.uk/archive/200406/0298.html
or this:
http://amber.ch.ic.ac.uk/archive/200503/0122.html
or this:
http://amber.ch.ic.ac.uk/archive/200610/0205.html
Since Amber 7 works, you can still use that, I would imagine. You might
provide details about your compiler and what architecture (emt64?) you are
using.
....dac
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Received on Sun Jun 03 2007 - 06:07:43 PDT
