Re: AMBER: Question about MPI-IO

From: David LeBard <david.lebard.asu.edu>
Date: Mon, 11 Jun 2007 18:59:33 -0700

Many thanks to everyone for the informative and helpful answers about
MPI-IO.

David

On 6/11/07, Ross Walker <ross.rosswalker.co.uk> wrote:
>
> > petascale machines and/or if you routinely run off NSF mounted disks
> > and/or if you run a really large system. We do worry about I/O
>
> Note if you are writing to a NFS filesystem MPI/IO likely won't help you
> anyway. If anything it will likely just slow things down. In this
> situation
> your only real option is to use binary trajectory files or reduce the
> frequency of trajectory writing to get the I/O load down.
>
> MPI/IO will only really help you if you have a decent SAN connected to
> each
> of your nodes with a decent parallel filesystem like GPFS or Lustre.
>
> Just my 2c...
>
> Ross
>
> /\
> \/
> |\oss Walker
>
> | HPC Consultant and Staff Scientist |
> | San Diego Supercomputer Center |
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> | http://www.rosswalker.co.uk | PGP Key available on request |
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Received on Wed Jun 13 2007 - 06:07:27 PDT
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