Amber Archive Mar 2019: by date

Friday, 1 March 2019
- Re: [AMBER] Ligand autoimaging issue Amber18 David A Case
- [AMBER] Doubt regarding input files in NMR refinement RITUPARNA ROY
- Re: [AMBER] Doubt regarding input files in NMR refinement Christina Bergonzo
- Re: [AMBER] CPPTRAJ grid unknown command Daniel Roe
- Re: [AMBER] Atom type of Calcium Daniel Roe
- Re: [AMBER] is this reference energy dG ~34 kcal/mol reasonable for acetic acid? Feng, Zimin
- Re: [AMBER] CPPTRAJ grid unknown command Debarati DasGupta
- Re: [AMBER] CPPTRAJ grid unknown command Debarati DasGupta
- Re: [AMBER] CPPTRAJ grid unknown command Debarati DasGupta
- Re: [AMBER] is this reference energy dG ~34 kcal/mol reasonable for acetic acid? Cruzeiro,Vinicius Wilian D
- Re: [AMBER] is this reference energy dG ~34 kcal/mol reasonable for acetic acid? Feng, Zimin
- Re: [AMBER] is this reference energy dG ~34 kcal/mol reasonable for acetic acid? Feng, Zimin
- Re: [AMBER] is this reference energy dG ~34 kcal/mol reasonable for acetic acid? Feng, Zimin
- [AMBER] 1/2 term in dihdral Mayank Dixit
- Re: [AMBER] is this reference energy dG ~34 kcal/mol reasonable for acetic acid? Cruzeiro,Vinicius Wilian D
- Re: [AMBER] Atom type of Calcium Sunita Patel
Saturday, 2 March 2019
- [AMBER] distance restraint Sunita Patel
- Re: [AMBER] Reference energies in CpHMD (constant pH MD) for HIP Jason Swails
- Re: [AMBER] Reference energies in CpHMD (constant pH MD) for HIP Brian Radak
- Re: [AMBER] Atom type of Calcium Pengfei Li
Sunday, 3 March 2019
- [AMBER] [error] The system has extended beyond the extent of the virtual box Xiaocong Wang
- Re: [AMBER] [error] The system has extended beyond the extent of the virtual box Bill Ross
- Re: [AMBER] [error] The system has extended beyond the extent of the virtual box Xiaocong Wang
- Re: [AMBER] [error] The system has extended beyond the extent of the virtual box Bill Ross
- [AMBER] MM/PBSA topfile question Manyi Yang
- [AMBER] Solvating a Lipid bilayer in Amber Souvik Dey
- [AMBER] how to make sure .prmtop is the same for NEB calculation when using explicit solvent? 郭昱
- [AMBER] How can I generate of force field parameter for nano-material? xmgign.126.com
- Re: [AMBER] how to make sure .prmtop is the same for NEB calculation when using explicit solvent? Ghoreishi, Delaram
Monday, 4 March 2019
- [AMBER] Message-ID: <20190301134103.u232i6wjibdt4cav@godel.rutgers.edu> zaid kamal
- [AMBER] Retrieving topology file emanuele falbo
- Re: [AMBER] Retrieving topology file Daniel Roe
- Re: [AMBER] Retrieving topology file emanuele falbo
- [AMBER] CPPTRAJ SPAM error while executing the input file Debarati DasGupta
- [AMBER] Converting Charmm forcefileld to Amber Hadi Rahmaninejad
- Re: [AMBER] CPPTRAJ SPAM error while executing the input file Daniel Roe
- Re: [AMBER] Converting Charmm forcefileld to Amber Daniel Roe
- Re: [AMBER] Two dimensional replica exchange MD: Success rate Daniel Roe
- Re: [AMBER] Message-ID: <20190301134103.u232i6wjibdt4cav@godel.rutgers.edu> Daniel Roe
- Re: [AMBER] Converting Charmm forcefileld to Amber Hadi Rahmaninejad
Tuesday, 5 March 2019
- [AMBER] Use of amber force field in gromacs Akshay Prabhakant
- Re: [AMBER] CPPTRAJ SPAM error while executing the input file Daniel Roe
- [AMBER] Amber18 pmemd TI Hosein Geraili Daronkola
- Re: [AMBER] Use of amber force field in gromacs Mayank Dixit
- Re: [AMBER] Converting Charmm forcefileld to Amber Daniel Roe
- Re: [AMBER] [error] The system has extended beyond the extent of the virtual box David A Case
- Re: [AMBER] MM/PBSA topfile question David A Case
- Re: [AMBER] Use of amber force field in gromacs David A Case
- [AMBER] simulating a box of pure TIP3P water Debarati DasGupta
- [AMBER] improper dihedral Mayank Dixit
- Re: [AMBER] CPPTRAJ SPAM error while executing the input file Daniel Roe
- [AMBER] One query about SPAM type calculations Debarati DasGupta
- [AMBER] What does "0 Kb value" mean in dihedrals Erdem Yeler
- [AMBER] SPAM analysis Debarati DasGupta
- Re: [AMBER] Converting Charmm forcefileld to Amber Jason Swails
Wednesday, 6 March 2019
- [AMBER] Error in REMD with pmemd.cuda.MPI Ikuo KURISAKI
- [AMBER] Problem with distance restraints in membrane system with pmemd.cuda David Bickel
- [AMBER] Protein - Ligand simulation on amber and PBSA Prasanth G, Research Scholar
- Re: [AMBER] Error in REMD with pmemd.cuda.MPI Cruzeiro,Vinicius Wilian D
- Re: [AMBER] distance restraint Sundar
- [AMBER] chi1 angle of amino acids not having a CG atom Rosellen, Martin
- Re: [AMBER] What does "0 Kb value" mean in dihedrals David Case
- Re: [AMBER] distance restraint Sunita Patel
- Re: [AMBER] Error in REMD with pmemd.cuda.MPI Ikuo KURISAKI
- [AMBER] Chirality Restraint on a Part of Replica Ikuo KURISAKI
Thursday, 7 March 2019
- [AMBER] Query about metal RMSD regarding residue number or atom number shahid khan
- [AMBER] Help regarding protein DNA MD in AMBER Vikram Dalal
- Re: [AMBER] Query about metal RMSD regarding residue number or atom number Dr. Anselm Horn
- Re: [AMBER] Help regarding protein DNA MD in AMBER David A Case
- Re: [AMBER] improper dihedral David Case
- Re: [AMBER] distance restraint Sundar
- [AMBER] Running a MMPBSA calculation on only the structure Keiran Corbett
- Re: [AMBER] 1/2 term in dihdral David A Case
- [AMBER] Setbox and ChBox Lin Song
- [AMBER] system explosion Hadi Rahmaninejad
- Re: [AMBER] distance restraint Sunita Patel
- [AMBER] ValueError: invalid literal for int() with base 10: '-3.0' SATYAJIT KHATUA
- [AMBER] MMPBSA.py Calculation error Rinsha Chk
- [AMBER] calculate RDF using COM Saikat Pal
Friday, 8 March 2019
- [AMBER] Error in Minimization Zhonghua Xia
- Re: [AMBER] Error in Minimization Bill Ross
- Re: [AMBER] system explosion David A Case
- Re: [AMBER] MMPBSA.py Calculation error David A Case
- Re: [AMBER] Error in Minimization David A Case
- Re: [AMBER] MMPBSA.py Calculation error Rinsha Chk
- Re: [AMBER] Problem with distance restraints in membrane system with pmemd.cuda David Bickel
- [AMBER] Query about protein DNA MD Vikram Dalal
- [AMBER] write equilibrium bond lengths, angles and dihedrals from a ligand structure file to a frcmod file Thomas Evangelidis
- Re: [AMBER] Query about protein DNA MD David A Case
- Re: [AMBER] Potential bug in sander/LMOD Charles Lin
- Re: [AMBER] Potential bug in sander/LMOD Scott Brozell
Saturday, 9 March 2019
- Re: [AMBER] What does "0 Kb value" mean in dihedrals Erdem Yeler
- Re: [AMBER] Problem with distance restraints in membrane system with pmemd.cuda David Case
- Re: [AMBER] write equilibrium bond lengths, angles and dihedrals from a ligand structure file to a frcmod file Dickson, Callum
Sunday, 10 March 2019
- Re: [AMBER] write equilibrium bond lengths, angles and dihedrals from a ligand structure file to a frcmod file Thomas Evangelidis
- [AMBER] CUDA COM distance restraint (v18 with patch.7 applied) Pratul Agarwal
- Re: [AMBER] CUDA COM distance restraint (v18 with patch.7 applied) Stephan Schott
- Re: [AMBER] CUDA COM distance restraint (v18 with patch.7 applied) Pratul Agarwal
- Re: [AMBER] CUDA COM distance restraint (v18 with patch.7 applied) Kellon Belfon
- Re: [AMBER] CUDA COM distance restraint (v18 with patch.7 applied) Pratul Agarwal
Monday, 11 March 2019
- [AMBER] antechamber bcc error Michael Shokhen
- Re: [AMBER] Problem with distance restraints in membrane system with pmemd.cuda David Bickel
- Re: [AMBER] antechamber bcc error David A Case
- Re: [AMBER] CUDA COM distance restraint (v18 with patch.7 applied) Charles Lin
- Re: [AMBER] Problem with distance restraints in membrane system with pmemd.cuda Charles Lin
- Re: [AMBER] calculate RDF using COM Daniel Roe
- Re: [AMBER] chi1 angle of amino acids not having a CG atom Daniel Roe
- Re: [AMBER] SPAM analysis Daniel Roe
- Re: [AMBER] One query about SPAM type calculations Daniel Roe
- Re: [AMBER] CPPTRAJ grid unknown command Daniel Roe
- Re: [AMBER] simulating a box of pure TIP3P water Daniel Roe
- Re: [AMBER] simulating a box of pure TIP3P water Daniel Roe
Tuesday, 12 March 2019
- Re: [AMBER] antechamber bcc error Michael Shokhen
- [AMBER] metal parameters Fabian Glaser
- [AMBER] Metal parameters method Fabian Glaser
- [AMBER] Research Programmer for VMD/NAMD at UIUC João Ribeiro
- [AMBER] Directly Set Restraint for Chilarity to Prmtop File Ikuo KURISAKI
Wednesday, 13 March 2019
- [AMBER] Quantitative measurement of hydrophobic and polar contacts Rakesh Srivastava
- [AMBER] Job terminated during TI calculation in pmemd.cuda 강무석
- [AMBER] nmode_com.96 高含露
- [AMBER] DSSP residue vs time graph Myriam Hanna
- Re: [AMBER] Directly Set Restraint for Chilarity to Prmtop File David Case
- [AMBER] CPPTRAJ Grid with COM Kung, Ryan
- [AMBER] velocities from and velocityautocorr Ruth Helena Tichauer
- Re: [AMBER] CPPTRAJ Grid with COM Daniel Roe
- Re: [AMBER] DSSP residue vs time graph Premila Samuel Mohan Dass
- Re: [AMBER] velocities from and velocityautocorr Ruth Helena Tichauer
- Re: [AMBER] DSSP residue vs time graph Myriam Hanna
- Re: [AMBER] CPPTRAJ Grid with COM Kung, Ryan
- Re: [AMBER] CPPTRAJ Grid with COM Daniel Roe
- Re: [AMBER] velocities from and velocityautocorr Daniel Roe
- [AMBER] parameters for cc and cd Träg, Johannes
- [AMBER] Jar pulling Gerardo Zerbetto De Palma
- Re: [AMBER] Jar pulling Pratul Agarwal
- Re: [AMBER] velocities from and velocityautocorr Ruth Helena Tichauer
- Re: [AMBER] parameters for cc and cd David Case
- Re: [AMBER] ValueError: invalid literal for int() with base 10: '-3.0' SATYAJIT KHATUA
Thursday, 14 March 2019
- [AMBER] [MGMS-DS]: Molecular Modelling Workshop + Tim Clark Birthday Symposium: April 08-11, 2019 in Erlangen, Germany Dr. Anselm Horn
- Re: [AMBER] DSSP residue vs time graph Daniel Roe
- Re: [AMBER] ValueError: invalid literal for int() with base 10: '-3.0' Daniel Roe
- Re: [AMBER] DSSP residue vs time graph Myriam Hanna
- [AMBER] PNEB simulation transition Ashutosh Shandilya
- Re: [AMBER] PNEB simulation transition Ghoreishi, Delaram
- Re: [AMBER] PNEB simulation transition Ashutosh Shandilya
- [AMBER] MMPBSA.py.MPI error Prabir Khatua
Friday, 15 March 2019
- [AMBER] the question of calculate the binding free energy by MMPBSA.py bjyx20090941
- [AMBER] charged residue mutation free energy Hosein Geraili Daronkola
- Re: [AMBER] velocities from and velocityautocorr Ruth Helena Tichauer
- Re: [AMBER] Jar pulling Stephan Schott
- Re: [AMBER] Jar pulling Gerardo Zerbetto De Palma
- [AMBER] gaff2 parameters of c3-c3-os-c3 Träg, Johannes
- Re: [AMBER] Error in Minimization Zhonghua Xia
- Re: [AMBER] Error in Minimization Zhonghua Xia
- [AMBER] Restraint and ambmask syntax issue Xiaoyu Wang
- Re: [AMBER] gaff2 parameters of c3-c3-os-c3 David Case
- Re: [AMBER] Restraint and ambmask syntax issue David Case
- Re: [AMBER] velocities from and velocityautocorr Daniel Roe
Saturday, 16 March 2019
- [AMBER] Amber18 STSM 李耀
- Re: [AMBER] metal parameters Pengfei Li
- Re: [AMBER] metal parameters Marcelo Andrade Chagas
- [AMBER] Homodimerization of IRF3 protein Debarati DasGupta
Sunday, 17 March 2019
- [AMBER] A confused question about calculate the binding free energy from MMPBSA.py bjyx20090941
- Re: [AMBER] Amber18 STSM Feng Pan
Monday, 18 March 2019
- Re: [AMBER] velocities from and velocityautocorr Ruth Helena Tichauer
- Re: [AMBER] gaff2 parameters of c3-c3-os-c3 Träg, Johannes
- Re: [AMBER] Installation Problem Bill Ross
- Re: [AMBER] Installation Problem Gerardo Zerbetto De Palma
- Re: [AMBER] Installation Problem Bill Ross
- [AMBER] pdb file with 4 atoms coordinates of water molecules with TIP4PFB model bjyx20090941
- Re: [AMBER] pdb file with 4 atoms coordinates of water molecules with TIP4PFB model Daniel Roe
- [AMBER] Assigning protonation states manually to the amino vs CpH MD simulation Bharat Manna
- Re: [AMBER] Assigning protonation states manually to the amino vs CpH MD simulation Carlos Simmerling
- [AMBER] Nastruct vs 3DNA Jason Imamoto
- Re: [AMBER] Nastruct vs 3DNA Daniel Roe
- Re: [AMBER] Nastruct vs 3DNA Jason Imamoto
- Re: [AMBER] Nastruct vs 3DNA Daniel Roe
Tuesday, 19 March 2019
- [AMBER] Input Reservoir REMD Raimon Fabregat
- Re: [AMBER] Input Reservoir REMD koushik kasavajhala
- Re: [AMBER] Amber Installation David A Case
- Re: [AMBER] Installation problem AMBER16 David A Case
- [AMBER] Hyaluronic acid using Glycam06 monia kam
- [AMBER] Query regarding secondary structure Saikat Pal
Wednesday, 20 March 2019
- Re: [AMBER] Hyaluronic acid using Glycam06 Casalini Tommaso
- Re: [AMBER] Query regarding secondary structure Daniel Roe
- [AMBER] Gpu illegal memory code accessed Debarati DasGupta
- Re: [AMBER] Gpu illegal memory code accessed Brian Radak
- [AMBER] Amber18: cv_min and cv_max for periodic cv in ABMD 李耀
- [AMBER] Installation error AmberTools18 - [test.rism1d] Error Mariana Simões Ferreira
- [AMBER] cuda test failing after installation Ravi Abrol
- Re: [AMBER] Nastruct vs 3DNA: Files used for analysis and the output Jason Imamoto
- Re: [AMBER] Nastruct vs 3DNA: Files used for analysis and the output Daniel Roe
- Re: [AMBER] Installation error AmberTools18 - [test.rism1d] Error David A Case
Thursday, 21 March 2019
- [AMBER] using amber parameters in namd Akshay Prabhakant
- [AMBER] FEW amber- LIE analysis Sowmya Indrakumar
- Re: [AMBER] Gpu illegal memory code accessed Debarati DasGupta
- Re: [AMBER] Installation error AmberTools18 - [test.rism1d] Error Daniel Roe
- [AMBER] Amber18: Adaptively Biased MD (Metadynalmics) 李耀
- [AMBER] DFTB3/MM simulations of CCCC zinc finger Dreab, Ana
- [AMBER] CEMD protcnt meaning Feng, Zimin
- Re: [AMBER] CEMD protcnt meaning Cruzeiro,Vinicius Wilian D
- Re: [AMBER] CEMD protcnt meaning Feng, Zimin
- Re: [AMBER] using amber parameters in namd David A Case
- Re: [AMBER] Gpu illegal memory code accessed David A Case
- [AMBER] Incorrect electric field Ashutosh Mishra
- Re: [AMBER] Incorrect electric field Bill Ross
- Re: [AMBER] Incorrect electric field Ashutosh Mishra
- Re: [AMBER] Incorrect electric field Bill Ross
- Re: [AMBER] Incorrect electric field Ashutosh Mishra
Friday, 22 March 2019
- Re: [AMBER] Incorrect electric field Bill Ross
- [AMBER] Closest command in cpptraj for non aqeous solvents Debarati DasGupta
- Re: [AMBER] Closest command in cpptraj for non aqeous solvents Daniel Roe
- Re: [AMBER] Closest command in cpptraj for non aqeous solvents Debarati DasGupta
- Re: [AMBER] Closest command in cpptraj for non aqeous solvents Debarati DasGupta
- [AMBER] Occupancy values in pseudo PDB from CPPRAJ grid analysis anu chandra
Saturday, 23 March 2019
- Re: [AMBER] DFTB3/MM simulations of CCCC zinc finger Pengfei Li
Sunday, 24 March 2019
- Re: [AMBER] cuda test failing after installation David Case
- Re: [AMBER] Amber18: Adaptively Biased MD (Metadynalmics) Feng Pan
- Re: [AMBER] cuda test failing after installation Ravi Abrol
Monday, 25 March 2019
- [AMBER] PCA analysis of NM maya nair
- [AMBER] Single point energy calculation SCC-DFTB Anthony Bogetti
- Re: [AMBER] Single point energy calculation SCC-DFTB Setyanto Md
- [AMBER] Simulation of spherical macroion system Rakesh Srivastava
- Re: [AMBER] Single point energy calculation SCC-DFTB David A Case
- [AMBER] locating the single probe out of 80000 snapshots Debarati DasGupta
- Re: [AMBER] Incorrect electric field Charles Lin
- [AMBER] Problems calculating density over distance Lucas Bandeira
- [AMBER] varying pressure conditions? Shayna Hilburg
- Re: [AMBER] Incorrect electric field Bill Ross
Tuesday, 26 March 2019
- [AMBER] AMBER 18 error in QM region of QMMM Abhilash J
- Re: [AMBER] AMBER 18 error in QM region of QMMM Szymon Żaczek
- Re: [AMBER] AMBER 18 error in QM region of QMMM Bill Ross
- Re: [AMBER] Occupancy values in pseudo PDB from CPPRAJ grid analysis Daniel Roe
- Re: [AMBER] AMBER 18 error in QM region of QMMM Abhilash J
- [AMBER] Solvate with methanol and acetone using free energy methods? Defrese, Matthew
- Re: [AMBER] Closest command in cpptraj for non aqeous solvents Daniel Roe
- Re: [AMBER] Solvate with methanol and acetone using free energy methods? Debarati DasGupta
- [AMBER] Question about Amber TUTORIAL B5: Simulating the Green Fluorescent Protein A K
- Re: [AMBER] Question about Amber TUTORIAL B5: Simulating the Green Fluorescent Protein Debarati DasGupta
- Re: [AMBER] Problems calculating density over distance Daniel Roe
- Re: [AMBER] PCA analysis of NM Daniel Roe
- Re: [AMBER] locating the single probe out of 80000 snapshots Daniel Roe
- Re: [AMBER] Retrieving topology file Daniel Roe
- [AMBER] TIP4P Ice1h phase initial structure Mohd moid khan
- Re: [AMBER] locating the single probe out of 80000 snapshots Debarati DasGupta
- [AMBER] Error in `sander': malloc(): smallbin double linked list corrupted: Margarita I. Bernal-Uruchurtu
- Re: [AMBER] AMBER 18 error in QM region of QMMM Goetz, Andreas
- [AMBER] metal-oxide-metal interactions Arun Srikanth
- Re: [AMBER] locating the single probe out of 80000 snapshots Daniel Roe
- Re: [AMBER] AMBER 18 error in QM region of QMMM Abhilash J
- [AMBER] Design of graphene quantum dots RITUPARNA ROY
Wednesday, 27 March 2019
- [AMBER] TI atom limit Andrea Cavalli
- Re: [AMBER] Design of graphene quantum dots pavel.banas.upol.cz
- Re: [AMBER] FEW amber- LIE analysis Sowmya Indrakumar
- Re: [AMBER] Question about Amber TUTORIAL B5: Simulating the Green Fluorescent Protein David A Case
- Re: [AMBER] TI atom limit accuratefreeenergy.gmail.com
Tuesday, 26 March 2019
- Re: [AMBER] AMBER 18 error in QM region of QMMM Abhilash J
Wednesday, 27 March 2019
- Re: [AMBER] TI atom limit Andrea Cavalli
- Re: [AMBER] locating the single probe out of 80000 snapshots Debarati DasGupta
- Re: [AMBER] locating the single probe out of 80000 snapshots Daniel Roe
- Re: [AMBER] locating the single probe out of 80000 snapshots Debarati DasGupta
- Re: [AMBER] TI atom limit accuratefreeenergy.gmail.com
- Re: [AMBER] locating the single probe out of 80000 snapshots Daniel Roe
- Re: [AMBER] locating the single probe out of 80000 snapshots Debarati DasGupta
- [AMBER] how to get unbiased trajectories from biased trajectories Mayank Dixit
- [AMBER] Installation of AmberTools18 in macOS Mojave Reza Esmaeeli
- [AMBER] NMR order parameters from MD trajectories giulia palermo
- Re: [AMBER] Installation of AmberTools18 in macOS Mojave David Case
- Re: [AMBER] NMR order parameters from MD trajectories George M. Giambasu
- Re: [AMBER] Installation of AmberTools18 in macOS Mojave Gustaf Olsson
- Re: [AMBER] Installation of AmberTools18 in macOS Mojave Reza Esmaeeli
Thursday, 28 March 2019
- [AMBER] Regarding solvated interaction energy (SIE) method in Amber 16 Fulbabu Sk
- [AMBER] Building pmemd.cuda.MPI error in amber18 Meng Wu
- Re: [AMBER] Installation of AmberTools18 in macOS Mojave Gustaf Olsson
- [AMBER] A confused question about calculate the binding free energy from MMPBSA.py bjyx20090941
- Re: [AMBER] Installation of AmberTools18 in macOS Mojave Gustaf Olsson
- Re: [AMBER] Installation of AmberTools18 in macOS Mojave Reza Esmaeeli
- Re: [AMBER] Installation of AmberTools18 in macOS Mojave Gustaf Olsson
- Re: [AMBER] Installation of AmberTools18 in macOS Mojave Gustaf Olsson
- Re: [AMBER] Installation of AmberTools18 in macOS Mojave Reza Esmaeeli
- Re: [AMBER] DFTB3/MM simulations of CCCC zinc finger Dreab, Ana
- Re: [AMBER] DFTB3/MM simulations of CCCC zinc finger Pengfei Li
- [AMBER] Job position Ganesh Kamath
- [AMBER] regarding simulation angad sharma
Friday, 29 March 2019
- [AMBER] Building pmemd.cuda.MPI error in amber18 Meng Wu
- Re: [AMBER] Building pmemd.cuda.MPI error in amber18 David Case
- Re: [AMBER] regarding simulation Carlos Simmerling
- [AMBER] Query about plotting/visualizing the lifetime curve from H-Bond analysis using CPPTRAJ SATYAJIT KHATUA
- Re: [AMBER] Installation of AmberTools18 in macOS Mojave Gustaf Olsson
- Re: [AMBER] Query about plotting/visualizing the lifetime curve from H-Bond analysis using CPPTRAJ Daniel Roe
- Re: [AMBER] A confused question about calculate the binding free energy from MMPBSA.py Ray Luo
- Re: [AMBER] Installation of AmberTools18 in macOS Mojave Daniel Roe
- Re: [AMBER] Installation of AmberTools18 in macOS Mojave Gustaf Olsson
- [AMBER] nativecontacs in ccptraj Debarati DasGupta
- [AMBER] MMPBSA Prabir Khatua
- Re: [AMBER] MMPBSA Elvis Martis
- Re: [AMBER] MMPBSA Prabir Khatua
Saturday, 30 March 2019
- Re: [AMBER] MMPBSA Abhilash J
- [AMBER] NFE error: Cannot read &abmd namelist Jason Imamoto
- Re: [AMBER] nativecontacs in ccptraj Daniel Roe
- Re: [AMBER] MMPBSA Prabir Khatua
- Re: [AMBER] MMPBSA Wesley Michael Botello-Smith
- Re: [AMBER] MMPBSA Wesley Michael Botello-Smith
- Re: [AMBER] Job position David Case
- Re: [AMBER] varying pressure conditions? David Case
- Re: [AMBER] Solvate with methanol and acetone using free energy methods? Stephan Schott
- Re: [AMBER] MMPBSA Prabir Khatua
- Re: [AMBER] NFE error: Cannot read &abmd namelist Feng Pan
Sunday, 31 March 2019
- [AMBER] huge reference.frc in MMPBSA Antoine MARION
- Re: [AMBER] huge reference.frc in MMPBSA Ray Luo
- Re: [AMBER] How the instantaneous temperature is calculated in Amber ? Bill Ross
- Re: [AMBER] How the instantaneous temperature is calculated in Amber ? Bill Ross

Last message date: Sun Mar 31 2019 - 22:00:03 PDT
Archived on: Mon Nov 03 2025 - 05:55:47 PST

Amber Archive Mar 2019 by date