Re: [AMBER] Installation Problem

From: Gerardo Zerbetto De Palma <g.zerbetto.gmail.com>
Date: Mon, 18 Mar 2019 09:08:11 -0300

Try to update gcc, g++ and gfortran to 4.8 version.
Regards!
Gera

El lun., 18 de mar. de 2019 09:00, Bill Ross <ross.cgl.ucsf.edu> escribió:

> It seems the problem is your g++ installation or another setup step:
>
> Unable to compile a C program using g++
>
> Bill
>
>
> On 3/18/19 4:20 AM, david stephen wrote:
> > Respected Professor,
> > Thanks for your kind support so far provided to me and my research team.
> > Now i am installing whole amber16 package to my new workstation having
> CENTOS 6 (64 bit). I got the following error which i can not resolved,
> > I presumed the problem lies in the version of Python. The in-built
> centos 6 got python 2.6, but AMBER needs version atleast 2.7. I installed
> python 2.7, still the problem persist, i copied the error message when
> configurin the amber16...
> > ./configure2: line 947: cd: /opt/amber16/bin: No such file or
> directoryUsing the AmberTools miniconda installation in
> /opt/amber16/minicondaversion ./configure2: line 64:
> /opt/amber16/bin/amber.python: No such file or directory
> > Obtaining the gnu compiler suite versions, e.g.: gcc -vThe C version
> is 4.4.7The Fortran version is 4.4.7
> > Testing the gcc compiler: gcc -fPIC -D_FILE_OFFSET_BITS=64
> -D_LARGEFILE_SOURCE -o testp testp.cOK
> > Testing the g++ compiler: g++ -fPIC -o testp testp.cppIn file
> included from
> testp.cpp:1:/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstdio:43:28:
> error: bits/ c++config.h: No such file or
> directoryIn file included from
> /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstd
> io:44, from
> testp.cpp:1:/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef:49:
> error: expecte d constructor, destructor, or type
> conversion before ‘(’ tokenIn file included from
> /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstd
> io:45, from
> testp.cpp:1:/usr/include/stdio.h:30: error: expected constructor,
> destructor, or type conversion before ‘ex
> tern’./configure2: line 2288: ./testp: No such file or directoryError:
> Unable to compile a C program using g++ -fPIC Please check your
> compiler settings or configure flags.Configure failed due to the errors
> above!
> >
> > Kindly do the needful help
> >
> > Thanking you Sincerely Dr. A. David Stephen Dept. of Physics SSIET -
> Coimbatore,Tamilnadu, INDIA
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
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Received on Mon Mar 18 2019 - 05:30:03 PDT
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