Amber Archive Mar 2019: by messages with attachments

[AMBER] 1/2 term in dihdral Mayank Dixit (Fri Mar 01 2019 - 14:27:36 PST)
1. image.png (6406 bytes)
2. image.png (14766 bytes)
[AMBER] simulating a box of pure TIP3P water Debarati DasGupta (Tue Mar 05 2019 - 07:32:16 PST)
1. min_all.in (143 bytes)
2. TIP3P.inpcrd (39732 bytes)
3. TIP3P.prmtop (180977 bytes)
[AMBER] Error in Minimization Zhonghua Xia (Fri Mar 08 2019 - 01:18:57 PST)
1. smime.p7s (1515 bytes)
[AMBER] nmode_com.96 高含露 (Wed Mar 13 2019 - 01:24:58 PDT)
1. nmode_com.96.out (15082 bytes)
Re: [AMBER] DSSP residue vs time graph Myriam Hanna (Wed Mar 13 2019 - 09:54:12 PDT)
1. dssp_map.png (18001 bytes)
2. dssp_plots.png (244720 bytes)
[AMBER] Jar pulling Gerardo Zerbetto De Palma (Wed Mar 13 2019 - 10:21:47 PDT)
1. mdou.out (12228 bytes)
2. mdin.in (358 bytes)
3. restraint.RST (1400 bytes)
[AMBER] PNEB simulation transition Ashutosh Shandilya (Thu Mar 14 2019 - 09:04:18 PDT)
1. multiplot.ps (39297 bytes)
[AMBER] the question of calculate the binding free energy by MMPBSA.py bjyx20090941 (Fri Mar 15 2019 - 00:28:05 PDT)
1. the_question_of_binding_free_energy.docx (417964 bytes)
Re: [AMBER] Error in Minimization Zhonghua Xia (Fri Mar 15 2019 - 08:37:48 PDT)
1. smime.p7s (1515 bytes)
Re: [AMBER] Error in Minimization Zhonghua Xia (Fri Mar 15 2019 - 09:48:21 PDT)
1. smime.p7s (1515 bytes)
[AMBER] Query regarding secondary structure Saikat Pal (Tue Mar 19 2019 - 22:08:42 PDT)
1. VMD_Timeline_Window.png (26782 bytes)
2. dssp.jpg (121605 bytes)
[AMBER] Installation error AmberTools18 - [test.rism1d] Error Mariana Simões Ferreira (Wed Mar 20 2019 - 10:02:37 PDT)
1. 03-20_10-50-07.diff (2761 bytes)
2. 03-20_10-50-07.log (367011 bytes)
Re: [AMBER] Nastruct vs 3DNA: Files used for analysis and the output Jason Imamoto (Wed Mar 20 2019 - 11:00:51 PDT)
1. Nastruct_test.zip (128344 bytes)
[AMBER] Closest command in cpptraj for non aqeous solvents Debarati DasGupta (Fri Mar 22 2019 - 12:23:32 PDT)
1. image.png (61124 bytes)
[AMBER] Problems calculating density over distance Lucas Bandeira (Mon Mar 25 2019 - 10:41:48 PDT)
1. number_density.dat (12987 bytes)
2. density_cpptraj.out (1984 bytes)
3. density_cpptraj.in (87 bytes)
4. mass_density.dat (12987 bytes)
Re: [AMBER] AMBER 18 error in QM region of QMMM Abhilash J (Tue Mar 26 2019 - 23:02:49 PDT)
1. Arginine_H_bond.png (130856 bytes)
2. water_H_arginine_N.png (134146 bytes)
[AMBER] NFE error: Cannot read &abmd namelist Jason Imamoto (Sat Mar 30 2019 - 04:26:33 PDT)
1. samp_2D_Lin1_Aform.cntl (1293 bytes)
2. cv_NoB_mRMSD_ALin1_copy.in (3217 bytes)
3. GCP1.groupfile (4562 bytes)

Amber Archive Mar 2019 by messages with attachments