Two-dimesional flooding of the U5G truncated.
The two collective variables are
number of bonds following central hydrogen bonds at each bp along the 
helix axis multi RMSD folowing atoms for consecutive eta and thea 
psuedotorsions.

In this version the H-bonds of truncated U5G.  All
H-bonds are computed heavy atom to heavy atom.

Changed the values so that restart files will be written ten times.
Also changed the max value and resolution to acquire extents
that are equal.

Jason M. Imamoto, January 29, 2019

 &cntrl
   imin=0, ntx=5, irest=1, ntxo=1, ntpr=2500,
   ntwr=-10000, ntwx=2500, ntwv=25000, ntwe=2500,
   ntf=2, ntc=2, ntb=1, nstlim=150000, dt=0.002,
   iwrap=1,ntr=0, nmropt=1, 
   temp0=300.0, tempi=300.0, tautp=1.0,
   ntt=3, gamma_ln=1.0, ig=-1, 
   ntp=0, pres0=1.0, comp=44.6,
   taup=0.2, tol=0.00005, infe=1

/

&abmd
    mode='FLOODING',
    monitor_file='bias/ALin1-GCP1.mon.XX.txt',
    monitor_freq='2500',
    cv_file='src/cv_NoB_mRMSD_ALin1.in',
    snapshots_basename='bias/ALin1-GCP1.bias.nc',
    snapshots_freq=10000,
    umbrella_file='bias/test_XX.nc',
    timescale=10.0
/

 &end
 &ewald
   order=4,
   ew_type=0
 &end
/
 &wt type='REST',value1=0.1,value2=0.1,/
 &wt TYPE='END'/
 DISANG=src/RST_Linear1_Aform.inp
 LISTOUT=RST_ALin1-GCP1.XX.restraint
 /