Dear AMBER Community,
I'm trying to compute density over z direction using the command "density".
The system is a slab of gold with 12 layers under a water box. The result I
got after computing density is a graph with 12 peaks, value which is equal
the amount of layer that I have in the gold slab. But I can't understand
the result I got. Why am I getting only the peaks related to the gold atoms
and not the ones related to the water molecules. I can't understand the
intensity of each peak neither. Could somebody help me?
I'm sending attached the graphs I got and my input file to compute
diffusion.
Yours sincerely,
Lucas Bandeira
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Received on Mon Mar 25 2019 - 11:00:02 PDT
