[AMBER] PCA analysis of NM

From: maya nair <mayasnair1.gmail.com>
Date: Mon, 25 Mar 2019 17:35:01 +0530

I have generated the files in Normal mode analysis of trajectories and got
files such as complex.nmd, complex-hist.agr, complex_hist.gnun and the
trajectories files for 3 PC components. I got the histogram from .agr file
but I want to plot a scatterer plot for the data. Can anyone help me how
can I do that.I tried with gnuplot but not successful. In the histogram
what does the axes represent (is it PC vs frequency) and how to interpret
that data.
Thanks
Maya

-- 
Maya S Nair
Assistant Professor
Department of Biotechnology
IIT Roorkee
India
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Received on Mon Mar 25 2019 - 05:30:03 PDT
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