Hi,
The file produced by 'out' (e.g. 'dssp out dssp.agr') will contain the
secondary structure assignment (via a number) vs time for each
residue. Is that what you need?
-Dan
On Wed, Mar 13, 2019 at 11:30 AM Myriam Hanna <myriamkhanna.gmail.com> wrote:
>
> Hello,
>
> Is there a way to obtain a graph, a plot (not a ‘map’ the one that is generated by gnuplot) of secondary structure of residues vs time using cpptraj?
> I can obtain .gnu .agr .xvg files but none of them show a plot that looks like rmsd or rmsf plots for dssp residues vs time
>
> Thank you for your help
>
> Myriam Hanna
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Received on Thu Mar 14 2019 - 05:30:02 PDT
