Amber Archive May 2021: by subject

[AMBER] - DFT method for heme QM calculation
- Dawid das (Tue May 25 2021 - 06:30:25 PDT)
- Patil Pranita Uttamrao (Tue May 25 2021 - 01:46:13 PDT)
[AMBER] - Including ion type of interactions in free energy calculation
- David A Case (Wed May 26 2021 - 07:27:44 PDT)
- Patil Pranita Uttamrao (Mon May 24 2021 - 22:34:20 PDT)
[AMBER] [EXTERNAL] Release of AmberTools21
- Gerald Monard (Tue May 11 2021 - 17:32:58 PDT)
- Gustaf Olsson (Mon May 10 2021 - 07:41:35 PDT)
- Gustaf Olsson (Mon May 10 2021 - 07:41:18 PDT)
- Gustaf Olsson (Mon May 10 2021 - 06:11:25 PDT)
- David A Case (Mon May 10 2021 - 06:06:59 PDT)
- Gustaf Olsson (Mon May 10 2021 - 06:00:47 PDT)
- Gustaf Olsson (Mon May 10 2021 - 04:09:27 PDT)
- Gustaf Olsson (Mon May 10 2021 - 03:54:50 PDT)
- Gustaf Olsson (Thu May 06 2021 - 05:59:00 PDT)
- Gustaf Olsson (Thu May 06 2021 - 05:51:29 PDT)
- David A Case (Thu May 06 2021 - 05:34:47 PDT)
- Gustaf Olsson (Thu May 06 2021 - 05:10:08 PDT)
- David A Case (Sat May 01 2021 - 05:25:01 PDT)
[AMBER] A bug in PMEMD which may cause aray (ti_dvdl_values) index out-of-boundary error
- Ye Mei (Thu May 27 2021 - 17:54:46 PDT)
[AMBER] Algorithm Details of Addions/Addions2
- David A Case (Thu May 20 2021 - 06:15:17 PDT)
- Robert Molt (Mon May 17 2021 - 09:12:37 PDT)
[AMBER] AMBER 18 citation endnote file
- Athena N (Tue May 11 2021 - 23:16:36 PDT)
[AMBER] Amber stuck on Control data for the run
- Matias Machado (Wed May 12 2021 - 07:00:41 PDT)
- Daniel Roe (Wed May 12 2021 - 06:47:37 PDT)
- David A Case (Wed May 12 2021 - 06:07:01 PDT)
- Victoria E Hill (Wed May 12 2021 - 03:11:49 PDT)
[AMBER] AMBER/EVB
- David A Case (Thu May 20 2021 - 06:25:08 PDT)
[AMBER] Amber20 CUDA.serial tests comparison failed with gb calculation: differences at e-01 level
- David A Case (Fri May 07 2021 - 05:30:56 PDT)
- 石谷沁 (Fri May 07 2021 - 02:19:24 PDT)
[AMBER] AMBER20/AMBERTools21 Installation Errors when compiling mpich
- David A Case (Thu May 06 2021 - 05:14:09 PDT)
- 石谷沁 (Thu May 06 2021 - 00:56:19 PDT)
[AMBER] AmberTools21 cmake build
- David A Case (Thu May 13 2021 - 05:56:02 PDT)
- H. Kawasaki (Wed May 12 2021 - 23:49:40 PDT)
[AMBER] AMberTools21 installation
- David A Case (Wed May 26 2021 - 06:12:46 PDT)
- Gustaf Olsson (Mon May 24 2021 - 02:59:53 PDT)
- Neha Gandhi (Mon May 24 2021 - 02:39:55 PDT)
- Gustaf Olsson (Sun May 23 2021 - 23:33:58 PDT)
- Neha Gandhi (Fri May 21 2021 - 23:40:34 PDT)
[AMBER] Applying change to van der Waals for specific pairs of atom
- David A Case (Thu May 20 2021 - 06:08:06 PDT)
- Song, Lin (Wed May 19 2021 - 15:03:55 PDT)
- Smith, Richard (Tue May 18 2021 - 13:43:51 PDT)
[AMBER] APR- Umbrella sampling of Receptor- ligand complex
- Niel Henriksen (Mon May 31 2021 - 20:37:49 PDT)
- Rana Rehan Khalid (Sun May 30 2021 - 12:38:54 PDT)
[AMBER] atom-order problem with prmtop and cpptraj
- Daniel Roe (Mon May 03 2021 - 05:47:16 PDT)
- Vaibhav Dixit (Mon May 03 2021 - 05:39:09 PDT)
- David A Case (Mon May 03 2021 - 05:26:05 PDT)
- Vaibhav Dixit (Mon May 03 2021 - 05:18:21 PDT)
- Vaibhav Dixit (Mon May 03 2021 - 01:16:13 PDT)
[AMBER] Avoiding steric snafus with protein mutations in tleap?
- Matias Machado (Sat May 08 2021 - 11:15:29 PDT)
- Tucker Burgin (Fri May 07 2021 - 08:36:52 PDT)
[AMBER] Clustering getting killed
- Daniel Roe (Sat May 22 2021 - 10:29:10 PDT)
- Daniel Roe (Sat May 22 2021 - 10:28:07 PDT)
- Carlos Simmerling (Sat May 22 2021 - 08:18:49 PDT)
- Sruthi Sudhakar (Sat May 22 2021 - 06:43:09 PDT)
[AMBER] CMake Error at cmake/jedbrown/FindFFTW.cmake:307 (add_library):
- Akinyemi Omoniyi (Wed May 19 2021 - 21:46:31 PDT)
- David A Case (Tue May 18 2021 - 05:32:22 PDT)
- Akinyemi Omoniyi (Tue May 18 2021 - 02:03:26 PDT)
[AMBER] Combining GLYCAM and AMBER/GAFF
- Gustaf Olsson (Thu May 20 2021 - 23:49:46 PDT)
- Lachele Foley (Thu May 20 2021 - 19:32:21 PDT)
- David A Case (Thu May 20 2021 - 06:10:42 PDT)
- Gustaf Olsson (Tue May 18 2021 - 06:25:30 PDT)
[AMBER] Compiling Fortran on M1 chipset
- Joe Leonard (Wed May 19 2021 - 10:11:36 PDT)
[AMBER] Conformation search speed increase with Cartesian restraints
- Charo del Genio (Thu May 20 2021 - 04:40:15 PDT)
- Liao (Wed May 19 2021 - 14:02:32 PDT)
- Charo del Genio (Wed May 19 2021 - 10:25:51 PDT)
- Liao (Tue May 18 2021 - 20:41:58 PDT)
[AMBER] converting gromacs topology to amber
- David A Case (Wed May 05 2021 - 05:04:37 PDT)
- Ayesha Fatima (Tue May 04 2021 - 15:04:26 PDT)
- Ayesha Fatima (Mon May 03 2021 - 06:49:23 PDT)
- Daniel Roe (Mon May 03 2021 - 06:40:40 PDT)
- Ayesha Fatima (Mon May 03 2021 - 06:30:12 PDT)
- Daniel Roe (Mon May 03 2021 - 05:57:36 PDT)
- Ayesha Fatima (Sun May 02 2021 - 09:32:31 PDT)
[AMBER] Covalent bonds across periodic boundaries supported yet/ever?
- Thomas Cheatham (Wed May 26 2021 - 13:27:16 PDT)
- Matias Machado (Wed May 26 2021 - 13:14:38 PDT)
- David A Case (Wed May 26 2021 - 06:08:31 PDT)
- Tucker Burgin (Thu May 20 2021 - 08:58:59 PDT)
[AMBER] CPPTRAJ nastruct not recognising G-U wobble base pairs
- Daniel Roe (Fri May 14 2021 - 11:02:07 PDT)
- Francis Acquah (Thu May 13 2021 - 15:48:36 PDT)
[AMBER] CPPTRAJ nativecontacts
- Daniel Roe (Tue May 11 2021 - 12:21:44 PDT)
- Richard Kullmann (Mon May 10 2021 - 06:29:46 PDT)
- Daniel Roe (Mon May 03 2021 - 08:48:13 PDT)
- Richard Kullmann (Mon May 03 2021 - 07:28:36 PDT)
[AMBER] Cpptraj segfaults on single REMD trajectories?
- Daniel Roe (Fri May 14 2021 - 10:57:27 PDT)
- Brian Radak (Fri May 14 2021 - 10:40:40 PDT)
- Daniel Roe (Fri May 14 2021 - 08:32:20 PDT)
- Brian Radak (Fri May 14 2021 - 08:19:29 PDT)
[AMBER] DFT method for heme QM calculationPranita,
- Robert Molt (Tue May 25 2021 - 12:51:46 PDT)
- Matthew Guberman-Pfeffer (Tue May 25 2021 - 12:26:21 PDT)
[AMBER] differences in counterion position with water models and questions
- Vaibhav Dixit (Wed May 12 2021 - 09:20:40 PDT)
- Dr. Anselm Horn (Mon May 10 2021 - 05:37:52 PDT)
- Vaibhav Dixit (Thu May 06 2021 - 23:07:13 PDT)
[AMBER] Difficulty in doing umbrella sampling using LCOD method
- Soumyajit Karmakar (Thu May 06 2021 - 08:21:19 PDT)
[AMBER] Digest of issues installing AMBER21 in Centos 7
- David A Case (Sun May 09 2021 - 05:46:51 PDT)
- Azurmendi, Hugo (Sat May 08 2021 - 10:00:26 PDT)
[AMBER] Distance between nucleotides and amino acids
- Daniel Roe (Mon May 03 2021 - 06:11:58 PDT)
- Airy Sanjeev (Mon May 03 2021 - 03:19:47 PDT)
[AMBER] distance matrix all atoms
- Daniel Roe (Mon May 24 2021 - 08:36:02 PDT)
- Fabian Glaser (Mon May 24 2021 - 06:59:58 PDT)
[AMBER] Effect of noisy force calculations
- Thomas Fox (Wed May 12 2021 - 06:49:48 PDT)
[AMBER] Error due to faulty Connection atoms
- Guillem Vila I Julià (Wed May 19 2021 - 06:25:15 PDT)
- David A Case (Wed May 12 2021 - 06:11:24 PDT)
- Guillem Vila I Julià (Mon May 03 2021 - 03:11:25 PDT)
[AMBER] Error in pca analysis
- Sruthi Sudhakar (Mon May 31 2021 - 10:21:31 PDT)
[AMBER] Error Installing Amber20 on group's cluster
- Min Chiang Gary Ong (Wed May 12 2021 - 08:11:17 PDT)
- David A Case (Wed May 12 2021 - 05:50:35 PDT)
- Min Chiang Gary Ong (Tue May 11 2021 - 19:58:04 PDT)
[AMBER] Error running make install
- Rodrigo da Silva Bitzer (Fri May 14 2021 - 14:24:37 PDT)
- David A Case (Fri May 14 2021 - 05:33:57 PDT)
- Rodrigo da Silva Bitzer (Thu May 13 2021 - 13:33:29 PDT)
[AMBER] Error: Could not open file frcmod.ions1lm_126_hfe_opc: not found
- Akinyemi Omoniyi (Sun May 30 2021 - 05:48:57 PDT)
- David A Case (Sun May 30 2021 - 05:05:08 PDT)
- Akinyemi Omoniyi (Sat May 29 2021 - 21:39:39 PDT)
[AMBER] FEW MMGBSA calculation
- Yogeshwaran Krishnan (Tue May 11 2021 - 02:10:15 PDT)
[AMBER] Fortran runtime error:
- Ephraim Marondedze (Fri May 28 2021 - 23:09:03 PDT)
- David A Case (Fri May 28 2021 - 07:12:04 PDT)
- Ephraim Marondedze (Fri May 28 2021 - 01:13:48 PDT)
[AMBER] guidance for microsecond long MD simulations
- David A Case (Wed May 05 2021 - 11:42:59 PDT)
- Vaibhav Dixit (Wed May 05 2021 - 10:10:24 PDT)
[AMBER] How do I generate prmtop file for system containing more than 1 ligand?
- David A Case (Wed May 19 2021 - 10:22:23 PDT)
- Carlos Simmerling (Wed May 19 2021 - 09:19:40 PDT)
- Min Chiang Gary Ong (Wed May 19 2021 - 06:24:13 PDT)
[AMBER] How to calculate the contribution to protein-protein aggregation from hydrophobic interactions ?
- 刘为 (Thu May 13 2021 - 06:05:05 PDT)
[AMBER] Inconsistent results on TI with cpu vs gpu code
- David A Case (Sun May 09 2021 - 12:56:04 PDT)
- Giorgos Lambrinidis (Sun May 09 2021 - 09:19:12 PDT)
- Giorgos Lambrinidis (Wed May 05 2021 - 10:42:58 PDT)
[AMBER] Installation Ambertools21 Mac M1 (arm64)
- Florian Nachon (Sun May 02 2021 - 04:38:41 PDT)
- Yoshitaka Moriwaki (Sun May 02 2021 - 00:04:50 PDT)
- David A Case (Sat May 01 2021 - 09:51:00 PDT)
- Florian Nachon (Sat May 01 2021 - 05:49:43 PDT)
[AMBER] installation of AmberTools 21
- Qinghua Liao (Sun May 02 2021 - 06:45:59 PDT)
- Rudy Richardson (Sat May 01 2021 - 05:55:50 PDT)
- David A Case (Sat May 01 2021 - 05:40:48 PDT)
- Rudy Richardson (Sat May 01 2021 - 05:26:18 PDT)
- David A Case (Sat May 01 2021 - 05:20:23 PDT)
- Qinghua Liao (Fri Apr 30 2021 - 16:35:23 PDT)
[AMBER] Joining two molecules
- Gustaf Olsson (Mon May 31 2021 - 02:34:18 PDT)
- Gustaf Olsson (Mon May 31 2021 - 00:37:12 PDT)
- Daniel Roe (Fri May 28 2021 - 06:25:09 PDT)
- Gustaf Olsson (Fri May 28 2021 - 02:47:27 PDT)
- Daniel Roe (Fri May 28 2021 - 02:34:35 PDT)
- Gustaf Olsson (Fri May 28 2021 - 01:44:19 PDT)
- Daniel Roe (Wed May 26 2021 - 06:33:26 PDT)
- Gustaf Olsson (Wed May 26 2021 - 05:44:56 PDT)
- Gustaf Olsson (Wed May 26 2021 - 02:16:47 PDT)
- Gustaf Olsson (Wed May 26 2021 - 00:51:26 PDT)
- Gustaf Olsson (Wed May 26 2021 - 00:49:31 PDT)
- Gustaf Olsson (Wed May 26 2021 - 00:48:40 PDT)
- Dr. Anselm Horn (Tue May 25 2021 - 07:05:45 PDT)
- Daniel Roe (Tue May 25 2021 - 06:38:51 PDT)
- Gustaf Olsson (Tue May 25 2021 - 03:19:30 PDT)
[AMBER] Keeping input protein hydrogens?
- David A Case (Mon May 10 2021 - 13:58:28 PDT)
- Markus Metz (Mon May 10 2021 - 09:48:36 PDT)
[AMBER] kindly help with this mmpbsa.py.MPI error
- Daniel Roe (Tue May 25 2021 - 06:40:02 PDT)
- Gargi Bhattacharya (Tue May 25 2021 - 03:44:01 PDT)
[AMBER] ligand receptor dissociation study
- Song, Lin (Wed May 26 2021 - 09:39:04 PDT)
- Rana Rehan Khalid (Wed May 26 2021 - 09:23:04 PDT)
[AMBER] Lite Hash Rate and pmemd.cuda
- Alessandro Contini (Wed May 19 2021 - 01:12:05 PDT)
[AMBER] MBAR energies when using soft-core potential in pmemd TI
- Brian Radak (Mon May 10 2021 - 06:21:56 PDT)
- David A Case (Mon May 10 2021 - 06:00:31 PDT)
- Hosein Geraili Daronkola (Sun May 09 2021 - 15:15:01 PDT)
[AMBER] Miniconda pkg install error
- David A Case (Mon May 17 2021 - 05:30:02 PDT)
- H. Kawasaki (Mon May 17 2021 - 00:35:07 PDT)
[AMBER] MMGB/PBSA ligand with lone pair
- David A Case (Thu May 27 2021 - 07:12:34 PDT)
- Katia Galentino (Thu May 27 2021 - 01:55:37 PDT)
[AMBER] MMGBSA using charmm36 force field-- positive value
- 周丽萍 (Sun May 16 2021 - 18:21:39 PDT)
[AMBER] MMPBSA calculation error
- Yogeshwaran Krishnan (Tue May 04 2021 - 05:09:25 PDT)
[AMBER] MMPBSA.py and rms fit: Results depend on reference frame
- Lennart Gundelach (Thu May 27 2021 - 02:07:15 PDT)
- David A Case (Wed May 12 2021 - 06:00:55 PDT)
- Lennart Gundelach (Wed May 12 2021 - 00:33:55 PDT)
[AMBER] MULTI_RMSD NFE-Error : Cannot read &colvar namelist!
- Feng Pan (Sat May 29 2021 - 11:49:09 PDT)
- Luis Simon (Sat May 29 2021 - 05:35:39 PDT)
- Feng Pan (Fri May 28 2021 - 22:07:57 PDT)
[AMBER] Multiple Dihedral Parameters
- David A Case (Sun May 16 2021 - 12:09:44 PDT)
- Abdul Basit (Sun May 16 2021 - 09:51:03 PDT)
[AMBER] Mutate double stranded DNA?
- Vlad Cojocaru (Fri May 14 2021 - 09:03:41 PDT)
- Gustavo Seabra (Thu May 13 2021 - 11:25:00 PDT)
- Vlad Cojocaru (Thu May 13 2021 - 03:45:46 PDT)
- Carlos Simmerling (Thu May 13 2021 - 01:59:19 PDT)
- Mariano Curti (Thu May 13 2021 - 00:29:18 PDT)
- Gustavo Seabra (Wed May 12 2021 - 18:01:42 PDT)
[AMBER] N6-myristoyl lysine parameters
- Mark Fisher (Tue May 04 2021 - 19:02:39 PDT)
[AMBER] New In CPPTRAJ (May 2021)
- Daniel Roe (Fri May 14 2021 - 11:00:01 PDT)
- xichen li (Fri May 14 2021 - 02:37:30 PDT)
- Daniel Roe (Thu May 13 2021 - 11:50:29 PDT)
[AMBER] pmemd.cuda fails with "cudaMemcpyToSymbol: SetSim copy to cSim failed invalid device symbol"
- David A Case (Mon May 03 2021 - 05:11:08 PDT)
- Laura SCALVINI (Mon May 03 2021 - 01:08:18 PDT)
[AMBER] polarizable FF in amber18 or 20
- Vaibhav Dixit (Mon May 03 2021 - 11:02:43 PDT)
- Ray Luo (Mon May 03 2021 - 10:11:36 PDT)
- Vaibhav Dixit (Sat May 01 2021 - 23:35:25 PDT)
- Ray Luo (Sat May 01 2021 - 12:14:51 PDT)
[AMBER] Problem re. non-integer charge in glycoprotein
- RAJAS MALLENAHALLI RAO (Mon May 17 2021 - 05:23:36 PDT)
- Dr. Anselm Horn (Mon May 17 2021 - 03:42:04 PDT)
- RAJAS MALLENAHALLI RAO (Fri May 14 2021 - 09:24:07 PDT)
[AMBER] Query about AmberTools21 conda distribution
- Jan Brezovsky (Sat May 22 2021 - 08:09:21 PDT)
- David A Case (Sat May 22 2021 - 05:08:08 PDT)
- David A Case (Sun May 09 2021 - 12:59:44 PDT)
- Jan Brezovsky (Wed May 05 2021 - 00:52:31 PDT)
[AMBER] Query regarding density analysis
- ARITRA MITRA (Sun May 09 2021 - 08:12:40 PDT)
[AMBER] Query regarding density analysis in CPPTRAJ. Raising this issue again.
- Daniel Roe (Thu May 13 2021 - 09:26:02 PDT)
- ARITRA MITRA (Thu May 13 2021 - 08:06:14 PDT)
- Daniel Roe (Thu May 13 2021 - 08:02:05 PDT)
- ARITRA MITRA (Thu May 13 2021 - 07:34:06 PDT)
- Daniel Roe (Tue May 11 2021 - 12:09:03 PDT)
- ARITRA MITRA (Tue May 11 2021 - 11:02:38 PDT)
[AMBER] Questions about QM/MM simulations
- Goetz, Andreas (Wed May 05 2021 - 21:40:35 PDT)
- 马芳芳 (Wed May 05 2021 - 18:55:39 PDT)
[AMBER] Questions about QM/MM simulations (Goetz, Andreas)
- Goetz, Andreas (Fri May 07 2021 - 12:05:34 PDT)
- 马芳芳 (Fri May 07 2021 - 01:48:21 PDT)
[AMBER] Regarding the forcefield parameters for cytochrome P450 heme group
- Vaibhav Dixit (Fri May 28 2021 - 22:21:01 PDT)
- Patil Pranita Uttamrao (Fri May 28 2021 - 12:39:00 PDT)
[AMBER] Release of AmberTools21
- Kshatresh Dutta Dubey (Sat May 01 2021 - 04:40:23 PDT)
[AMBER] Residue-Ligand binding free energy calculations
- Rana Rehan Khalid (Mon May 24 2021 - 10:26:13 PDT)
- Carlos Simmerling (Mon May 24 2021 - 10:20:36 PDT)
- Rana Rehan Khalid (Mon May 24 2021 - 10:16:05 PDT)
[AMBER] Restraints and TI in absolute binding free energies
- Hans De Winter (Thu May 20 2021 - 03:39:25 PDT)
[AMBER] Seek a solution for can't generate the mol2 files for the metal site residues
- Daniel Roe (Thu May 27 2021 - 06:30:29 PDT)
- Huimin Tian (Wed May 26 2021 - 18:33:33 PDT)
[AMBER] Selenomethionine force field parameters
- Kellon Belfon (Sat May 15 2021 - 15:26:18 PDT)
- Rafał Madaj (Sat May 15 2021 - 15:05:54 PDT)
- Kellon Belfon (Sat May 15 2021 - 14:23:31 PDT)
- Kellon Belfon (Sat May 15 2021 - 07:46:26 PDT)
- Rafał Madaj (Fri May 14 2021 - 23:58:26 PDT)
- Jeffrey Wagner (Fri May 14 2021 - 14:05:36 PDT)
- Kellon Belfon (Fri May 14 2021 - 11:57:44 PDT)
- Jeffrey Wagner (Fri May 14 2021 - 10:57:18 PDT)
- David A Case (Fri May 14 2021 - 09:01:17 PDT)
- Jeffrey Wagner (Fri May 14 2021 - 07:54:44 PDT)
- Kellon Belfon (Thu May 13 2021 - 20:35:25 PDT)
- David A Case (Thu May 13 2021 - 18:45:09 PDT)
- Kellon Belfon (Thu May 13 2021 - 17:14:55 PDT)
- Rafał Madaj (Thu May 13 2021 - 10:50:25 PDT)
[AMBER] Simulating dehydrated bilayers with a vacuum above and below
- Blake Armstrong (Fri May 28 2021 - 01:37:39 PDT)
[AMBER] solvent accessibility
- David A Case (Sat May 15 2021 - 13:00:33 PDT)
- German P. Barletta (Sat May 15 2021 - 12:41:01 PDT)
- David A Case (Fri May 14 2021 - 18:22:04 PDT)
- Daniel Roe (Fri May 14 2021 - 11:04:20 PDT)
- Cato, Lee (Tue May 11 2021 - 09:20:13 PDT)
[AMBER] stacking interactions represented by force field equation?
- Jiri Sponer (Tue May 11 2021 - 10:04:20 PDT)
- Matias Machado (Tue May 11 2021 - 08:40:20 PDT)
- Jiri Sponer (Mon May 10 2021 - 09:02:38 PDT)
- Carlos Simmerling (Mon May 10 2021 - 07:52:55 PDT)
- Martin Rosellen (Mon May 10 2021 - 07:31:31 PDT)
[AMBER] Surprisingly Poor Performance of Quadro RTX5000 -- Any Ideas on Reasons...
- 石谷沁 (Sun May 16 2021 - 18:53:56 PDT)
[AMBER] Test
- Goetz, Andreas (Sun May 09 2021 - 18:03:14 PDT)
[AMBER] test message
- David A Case (Tue May 25 2021 - 05:13:54 PDT)
[AMBER] Troubleshooting long idle times in pmemd.MPI
- David A Case (Sun May 02 2021 - 05:30:29 PDT)
- Kevin Keane (Sat May 01 2021 - 11:42:39 PDT)
- David A Case (Sat May 01 2021 - 10:02:18 PDT)
[AMBER] trpcage benchmark: reduce 32x or dimerize ?
- Scott Brozell (Tue May 04 2021 - 12:37:05 PDT)
[AMBER] Umbrella sampling
- Thomas Cheatham (Wed May 26 2021 - 10:28:24 PDT)
- David A Case (Wed May 26 2021 - 06:26:59 PDT)
- Rana Rehan Khalid (Tue May 25 2021 - 15:00:35 PDT)
[AMBER] Umbrella sampling (Protein Receptor--ligand)
- David A Case (Sun May 30 2021 - 17:31:59 PDT)
- Rana Rehan Khalid (Sat May 29 2021 - 14:44:39 PDT)
[AMBER] Umbrella Sampling error
- Rana Rehan Khalid (Wed May 26 2021 - 14:56:12 PDT)
[AMBER] understanding DSSP outout
- Daniel Roe (Fri May 14 2021 - 08:42:05 PDT)
- Sadaf Rani (Thu May 06 2021 - 23:53:06 PDT)
[AMBER] xleap
- David A Case (Thu May 27 2021 - 05:08:45 PDT)
Amber20 CUDA.serial tests comparison failed with gb calculation: differences at e-01 level
- 石谷沁 (Fri May 07 2021 - 20:03:25 PDT)
AMBER20/AMBERTools21 Installation Errors when compiling mpich
- David A Case (Fri May 07 2021 - 05:14:07 PDT)
- 石谷沁 (Fri May 07 2021 - 01:53:34 PDT)
- 石谷沁 (Thu May 06 2021 - 17:49:21 PDT)
- 石谷沁 (Thu May 06 2021 - 06:40:12 PDT)

Amber Archive May 2021 by subject