Thank you David
I have not installed brew zlib at all, though maybe I’ll try to recompile over the weekend and se if that makes a difference.
It seems that this is connected to a prior issue with xcode which was solved by installing “deprecated” files manually:
https://stackoverflow.com/questions/52741673/how-can-i-install-zlib-on-mac-os-x-mojave-10-14
sudo installer -pkg /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg -target /
This is no longer possible so obviously, installing zlib and doing a bit of experimenting may be interesting.
If this does not work, it’s possible that a previous workaround "CFLAGS="-I$(xcrun --show-sdk-path)/usr/include” though pointing to the correct brew include folder may work.
If I find the time I’ll play around a bit with it and see what happens.
All the best
// Gustaf
On 6 May 2021, at 14:34, David A Case <david.case.rutgers.edu<mailto:david.case.rutgers.edu>> wrote:
On Thu, May 06, 2021, Gustaf Olsson wrote:
Finally had time to look at the test results of the compile, there seems to be an issue:
ld: library not found for -lz.tbd
collect2: error: ld returned 1 exit status
We know about this, but a solution is elusive. Once the semester is done
here in the US, we may be able to get further. Several points:
1. This only causes problems for some NAB programs. Since very few
AmberTools users use NAB anyway, for most people, this should not be a
problem. Further, many mac users actually have zlib installed via macports
or homebrew (since it is a common requirement). They should not see this
problem.
2. For a workaround, do this:
download zlib source from zlib.net<
http://zlib.net>
./configure; make; sudo make install
add -DCMAKE_PREFIX_PATH=/usr/local to the run_cmake script
3. Another workaround: use the conda package, where this problem
(mysteriously) doesn't occur.
...thanks for the report....dac
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Received on Thu May 06 2021 - 06:00:03 PDT
