Hi Olsson,
Yes miniconda is fetching the required packages yet ./run_cmake throws
error about the packages not found.
While I managed to resolve the issue, run_cmake complained about not
finding Plumed packages and library. I don't want to install Plumed.
I also tried installing using the old ./configure -noX11 -mpi gcc on Linux
cluster, this didn't work either. It was looking for pnetcdf! I don't want
pnetcdf installation.
I couldn't find anything in make files related to the above plumed or
pnetcdf issue.
Any thoughts on these?
Best regards,
Neha
On Mon, 24 May 2021, 4:34 pm Gustaf Olsson, <gustaf.olsson.lnu.se> wrote:
> I assume this is still during the ./run_cmake configuration?
>
> When installing, “make install”, is there any indication that miniconda is
> fetching and installing the mentioned packages?
>
> Best regards
> // Gustaf
>
> > On 22 May 2021, at 08:40, Neha Gandhi <n.gandhiau.gmail.com> wrote:
> >
> > Hi AMBER List,
> >
> > I am trying to install AmberTools21 using cmake method. ./run_cmake is
> > downloading miniconda however, the configuration fails with below missing
> > packages. I was assuming that miniconda is downloading and installing
> > numpy, scipy and matplotlib. I tried pip3 install numpy scipy matplotlib
> > but it still fails.
> > What is the work around to this solution?
> >
> > -- Checking for Python package numpy -- not found
> > -- Checking for Python package scipy -- not found
> > -- Checking for Python package matplotlib -- not found
> >
> > --
> > Regards,
> > Dr. Neha S. Gandhi,
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon May 24 2021 - 03:00:02 PDT
