Dear Amber Community,
I’m installing AMBER20 and AMBERTools21 on CentOS 7. I used devtoolset-8 for compiling so all compilers are version of 8.3.1. Cmake3 was used.
Serial module was installed successfully and the make test.serial all passed.
Then I followed the instructions here (
https://ambermd.org/InstCentOS.php) to install mpich for parallel module.
I downloaded mpich-3.3.2 package from mpich.org, extract the folder under amber20_src/AmberTools/src and run ./configure_mpich gnu.
For first try, I got error like below:
Error reported that aclocal-1.15 is missing on your system…
WARNING: 'aclocal-1.15' is missing on your system.
You should only need it if you modified 'acinclude.m4' or
'configure.ac' or m4 files included by 'configure.ac'.
The 'aclocal' program is part of the GNU Automake package:
<
http://www.gnu.org/software/automake>
It also requires GNU Autoconf, GNU m4 and Perl in order to run:
<
http://www.gnu.org/software/autoconf>
<
http://www.gnu.org/software/m4/>
<
http://www.perl.org/>
make: *** [Makefile:10608: aclocal.m4] Error 127
Following the instruction, I installed following packages one by one:
m4-1.4.8.tar.gz (
http://www.gnu.org/software/m4/m4.html)
autoconf-2.70.tar.gz (
http://www.gnu.org/software/autoconf/autoconf.html)
automake-1.15.tar.gz (
http://www.gnu.org/software/automake/#downloading)
For second try, it suggested syntax error which makes me hard to troubleshoot…
Is that related to the automake package version I installed? Is there a bundle of automake that’s suggested?
Any idea on how to fix this….? Thanks !!!
checking for errno.h... yes
checking for windows.h... no
checking for sys/mman.h... yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for _Bool... yes
checking for stdbool.h that conforms to C99... yes
checking for valgrind.h... no
checking for memcheck.h... no
checking for valgrind/valgrind.h... no
checking for valgrind/memcheck.h... no
checking for helgrind.h... no
checking for valgrind/helgrind.h... no
checking for drd.h... no
checking for valgrind/drd.h... no
checking whether the valgrind headers are broken or too old... yes
checking for clock_gettime... yes
checking for clock_getres... yes
checking for gethrtime... no
checking for mach_absolute_time... no
checking for gettimeofday... yes
./configure: line 14388: syntax error near unexpected token `else'
./configure: line 14388: `else $as_nop'
configure: error: MPL configure failed
MPICH configure failed, returning 1
Best,
Guqin
***********免责声明*************
本电子邮件中包含的信息仅供指定的或授权的个人或团体使用。本电子邮件及附件中提到的信息可能是保密信息或者法律特许保密的信息。如果你不是指定收件人，对于邮件内容的任何披露、复制、散布或者任何针对邮件内容进行的行为都是违法行为，需要严格禁止。如果您误收该电子邮件，请立即通知本公司并从您的系统中删除全部原始信息。该邮件可能会对您的系统或者数据造成损坏，对此我公司不承担任何责任。除非与公司业务有关，否则本邮件中的观点、结论、或者其它包含在邮件中的信息均为发件人个人行为，并不代表我公司。我公司有权保留对收发邮件的监控权利。
***********Business Email Disclaimer**************
This e-mail and any attachments are meant for the intended recipient only and may contain information belonging to Qilu Pharma that is privileged, confidential, proprietary, and/or otherwise protected or prohibited from disclosure. If you are not the correct recipient or received this e-mail erroneously, please inform the sender immediately and delete this mail from your system. Qilu Pharma state no liability for any damage to your system and data caused by this email. Unless this email is related to the business with the company, otherwise any views or opinions presented in this email are solely from the sender. Qilu Pharma has the right to monitor the sending and receiving of the e-mail.
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu May 06 2021 - 01:00:02 PDT
