[AMBER] N6-myristoyl lysine parameters

From: Mark Fisher <m8.fisher.qut.edu.au>
Date: Wed, 5 May 2021 02:02:39 +0000

I'm attempting to simulate a peptide with an N6-myristoyl lysine at the N-terminal. I need parameters for this residue, and I can't find them in any available amber force fields.

I note myristoyl is in both the lipid14 and GLYCAM06 force fields, so I could perhaps start there.

How should I go about parameterizing this residue?

Thanks,

Mark.
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Received on Tue May 04 2021 - 19:30:02 PDT