Re: [AMBER] Mutate double stranded DNA?

From: Gustavo Seabra <gustavo.seabra.gmail.com>
Date: Thu, 13 May 2021 14:25:00 -0400

Hi everyone,

Thanks a lot to everyone who answered, all suggestions were very good!

Just to give an update, Carlos's program has the advantage of automatically
handling a full sequence,while in Chimera (with `swapna`) I need to
do one-by-one. I don't know PyMol enough to have an opinion.

Thanks!

--
Gustavo Seabra.
On Wed, May 12, 2021 at 9:01 PM Gustavo Seabra <gustavo.seabra.gmail.com>
wrote:
> Friends,
>
> I'm looking for a tool that allows me to, starting from a PDB file with a
> double-strand DNA on it, mutate some nucleic acids but keeping the original
> backbone. Extra points if it can automatically apply the complementary
> mutations on the second strand.
>
> Does anyone know of such a tool?
>
> Thanks!
>
> --
> Gustavo Seabra
>
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Received on Thu May 13 2021 - 11:30:02 PDT