Dear Amber users,
I am trying to prepare a simulation of rhodopsin receptor. I have
parametrized the residue bound to the Retinal but when i perform the LEaP,
I get the following error:
Error!
Comparing atoms
.R<RET 297>.A<C14 64>,
.R<RET 297>.A<H28 66>,
.R<RET 297>.A<H29 67>, and
.R<RET 297>.A<H30 68>
to atoms
.R<RET 297>.A<C14 64>,
.R<THR 1>.A<N 1>,
.R<RET 297>.A<H28 66>, and
.R<RET 297>.A<H29 67>
This error may be due to faulty Connection atoms.
I don't want to have any separation between the "new" residue bound to the
Retinal and the following residue (the THR that appear in the error), and I
have no idea how to solve this problem.
If anyone could help me solve it, I would really appreciate it,
Sincerely,
Guillem
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Received on Mon May 03 2021 - 03:30:02 PDT
