this might be useful:
https://pubs.acs.org/doi/10.1021/acs.jctc.8b00643
Investigations of Stacked DNA Base-Pair Steps: Highly Accurate Stacking
Interaction Energies, Energy Decomposition, and Many-Body Stacking Effects
Holger Kruse*, Pavel Banáš, and Jiřı́ Šponer
J. Chem. Theory Comput. 2019, 15, 1, 95–115
On Mon, May 10, 2021 at 10:31 AM Martin Rosellen <
martinrosellen.googlemail.com> wrote:
> Dear Amber community,
>
> if I am right there is no explicit term for stacking interactions in
> protein force fields such as ff14SB. I was wondering if force fields
> somehow incorporate stacking interactions in the calculation of
> non-covalent bonds?
>
> best
> Martin
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Received on Mon May 10 2021 - 08:00:04 PDT
