Hello everyone,
I am trying to install Amber2020 on my group's cluster which is running on
Ubuntu 18.04.
When I was running the installation step (make install), I encounter this
error:
[ 36%] Building C object
AmberTools/src/sander/CMakeFiles/libsander.dir/qm2_read_adf_results.c.o
[ 36%] Building C object
AmberTools/src/sander/CMakeFiles/libsander.dir/KFReader.c.o
[ 36%] Building C object
AmberTools/src/sander/CMakeFiles/libsander.dir/ArrayList.c.o
[ 36%] Building Fortran object
AmberTools/src/sander/CMakeFiles/libsander.dir/prn_qmmm_dipole.F90.o
[ 36%] Building C object
AmberTools/src/sander/CMakeFiles/libsander.dir/Plumed.c.o
[ 36%] Linking Fortran shared library libsander.so
/usr/bin/ld: /usr/local/lib/libfftw3.a(assert.o): relocation R_X86_64_PC32
against symbol `stdout..GLIBC_2.2.5' can not be used when making a shared
object; recompile with -fPIC
/usr/bin/ld: final link failed: Bad value
collect2: error: ld returned 1 exit status
AmberTools/src/sander/CMakeFiles/libsander.dir/build.make:5364: recipe for
target 'AmberTools/src/sander/libsander.so' failed
make[2]: *** [AmberTools/src/sander/libsander.so] Error 1
CMakeFiles/Makefile2:2647: recipe for target
'AmberTools/src/sander/CMakeFiles/libsander.dir/all' failed
make[1]: *** [AmberTools/src/sander/CMakeFiles/libsander.dir/all] Error 2
Makefile:151: recipe for target 'all' failed
make: *** [all] Error
make: *** [all] Error 2
And the installation ceases by itself. Any help would be appreciated!
Gary
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue May 11 2021 - 20:00:03 PDT
