Amber Archive Aug 2008: by date

Thursday, 31 July 2008
- Re: AMBER: Prepgen Grange Hermitage
- Re: AMBER: Prepgen Grange Hermitage
- AMBER: Compailation problum in Amber 10 srinivas sudani
Friday, 1 August 2008
- AMBER: bacteriochlorophyll ff Anna Karawajczyk
- AMBER: Bonds getting shorter in sander Peter Gannett
- Re: AMBER: Bonds getting shorter in sander Carlos Simmerling
- Fwd: AMBER: prepare an initial structure in Amber Lachele Foley (Lists)
- Re: AMBER: Compailation problum in Amber 10 David A. Case
- Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9 Jianyin Shao
- AMBER: Simulating protein conformational changes? Sasha Buzko
- AMBER: respgen -a charge groups function ineffective unless Grange Hermitage
Saturday, 2 August 2008
- AMBER: PDB files in Amber10 Francesco Pietra
- AMBER: error in parallel amber 9 test Jaber Jahanbin Sardroodi
- Re: AMBER: error in parallel amber 9 test David A. Case
- Re: AMBER: silhouette width/coefficient after clustering by PTRAJ9.9 Jianyin Shao
- Re: AMBER: Trans proline Brent Krueger
Sunday, 3 August 2008
- Re: AMBER: error in parallel amber 9 test Jaber Jahanbin Sardroodi
- Re: AMBER: error in parallel amber 9 test David A. Case
- Re: AMBER: Compailation problum in Amber 10 srinivas sudani
Monday, 4 August 2008
- AMBER: Problem with setting the NMR restraints Alex Spasic
- AMBER: Set 251 is corrupted, ptraj error... Waqas Nasir
- Re: AMBER: Problem with setting the NMR restraints David A. Case
- Re: AMBER: Set 251 is corrupted, ptraj error... David A. Case
- Re: AMBER: Problem with setting the NMR restraints Alex Spasic
- Re: AMBER: Problem with setting the NMR restraints Carlos Simmerling
- AMBER: Biased MD with Amber 10 Francesco Pietra
- Re: AMBER: Problem with setting the NMR restraints Alex Spasic
- AMBER: divcon.rst ?? IN SUK JOUNG
- AMBER: help me for filling a nanotube with water?? Jaber Jahanbin Sardroodi
- AMBER: NMR structure as initial structure Siddharth Rastogi
Tuesday, 5 August 2008
- AMBER: addles Urszula Uciechowska
- AMBER: Need help with force field parameters for Lipopolysaccharide (LPS) dipti lele
- Re: AMBER: addles Carlos Simmerling
- Re: AMBER: Set 251 is corrupted, ptraj error... Waqas Nasir
- AMBER: MM_PBSA snapshot statistic calc problem Hannes Wallnoefer
- Re: AMBER: Need help with force field parameters for Lipopolysaccharide (LPS) Wenyong Tong
- RE: AMBER: Need help with force field parameters for Lipopolysaccharide (LPS) Matthew Tessier
- Re: AMBER: Prepgen Junmei Wang
- Re: AMBER: Need help with force field parameters for Lipopolysaccharide (LPS) Wenyong Tong
- AMBER: NAB: getseq_from_pdb() IN SUK JOUNG
- Re: AMBER: NMR structure as initial structure David A. Case
Wednesday, 6 August 2008
- AMBER: Compailation problum in Amber 10 srinivas sudani
- RE: AMBER: Compailation problum in Amber 10 Ross Walker
- AMBER: Problems with the charge (membrane simulation) rebeca.mmb.pcb.ub.es
Thursday, 7 August 2008
- AMBER: Not integral charge increasing with number of lipids rebeca.mmb.pcb.ub.es
- AMBER: entropy of released water Swarup Gupta
- AMBER: Re: entropy of released water Swarup Gupta
- AMBER: aggregation or cluster detection fatima.chami.durham.ac.uk
- AMBER: linear interaction energy Urszula Uciechowska
- AMBER: NAB conjgrad returns error? Carra, Claudio (JSC-SK)[USRA]
- AMBER: problem with minimization luzhenw1.msu.edu
- RE: AMBER: Problems with the charge (membrane simulation) Ross Walker
- RE: AMBER: Not integral charge increasing with number of lipids Ross Walker
- RE: AMBER: aggregation or cluster detection Ross Walker
- Re: AMBER: problem with minimization Carlos Simmerling
- Re: AMBER: NAB conjgrad returns error? Andreas Svrcek-Seiler
- Re: AMBER: aggregation or cluster detection Carlos Simmerling
- Re: AMBER: aggregation or cluster detection Lachele Foley (Lists)
- RE: AMBER: problem with minimization Ross Walker
- RE: AMBER: NAB conjgrad returns error? Carra, Claudio (JSC-SK)[USRA]
- AMBER: parameters Thomas Leonard
Friday, 8 August 2008
- RE: AMBER: Compailation problum in Amber 10 Ranga Swamy
- AMBER: value of Pi in Amber Alan
- AMBER: LES Urszula Uciechowska
- RE: AMBER: NAB conjgrad returns error? NIEL MICHAEL HENRIKSEN
- AMBER: PBCAL in MM_PBSA Hannes Wallnoefer
- RE: AMBER: NAB conjgrad returns error? Andreas Svrcek-Seiler
- RE: AMBER: PBCAL in MM_PBSA Ray Luo
- RE: AMBER: NAB conjgrad returns error? NIEL MICHAEL HENRIKSEN
- Re: AMBER: Compailation problum in Amber 10 David A. Case
Saturday, 9 August 2008
- AMBER: Is G_disp calculated in MM_PBSA now? cgji
Monday, 11 August 2008
- Re: AMBER: Prepgen Grange Hermitage
- AMBER: PBCAL in MM_PBSA Thomas Leonard
- AMBER: mmpbsa Urszula Uciechowska
- AMBER: Minimization methods teresa.ierano.unina.it
- Re: AMBER: Minimization methods E.M.
- RE: AMBER: Minimization methods Ross Walker
- Re: AMBER: Minimization methods M. L. Dodson
- RE: AMBER: Minimization methods teresa.ierano.unina.it
- Re: AMBER: Minimization methods teresa.ierano.unina.it
- RE: AMBER: Is G_disp calculated in MM_PBSA now? Ray Luo
- RE: AMBER: NAB conjgrad returns error? Carra, Claudio (JSC-SK)[USRA]
- Re: AMBER: NAB conjgrad returns error? David A. Case
- RE: AMBER: NAB conjgrad returns error? Carra, Claudio (JSC-SK)[USRA]
- RE: AMBER: NAB conjgrad returns error? NIEL MICHAEL HENRIKSEN
- AMBER: GPCR membrane simulation, setting surface tension Fiona McRobb
- AMBER: questions about previous posts Naser Alijabbari
- RE: AMBER: questions about previous posts Ross Walker
Tuesday, 12 August 2008
- Re: AMBER: GPCR membrane simulation, setting surface tension Vlad Cojocaru
- AMBER: Querry about simulating a glycopeptide dipti lele
- AMBER: Using RDCs for structure refinement David Witte
- Re: AMBER: Querry about simulating a glycopeptide Lachele Foley (Lists)
- Re: AMBER: Using RDCs for structure refinement David A. Case
- AMBER: MM-PBSA Issue in Amber 10 Peterson, Matthew W.
- AMBER: empty frcmod file but missing parameters moitrayee.mbu.iisc.ernet.in
- Re: AMBER: empty frcmod file but missing parameters Alessandro Nascimento
- Re: AMBER: Prepgen Junmei Wang
- Re: AMBER: empty frcmod file but missing parameters moitrayee.mbu.iisc.ernet.in
- AMBER: frcmod:attn needs revision moitrayee.mbu.iisc.ernet.in
- AMBER: glycoprotein setup Arturas Ziemys
- RE: [!!!] - Re: AMBER: GPCR membrane simulation, setting surface tension - Message is from an unknown sender Fiona McRobb
- Re: AMBER: help me for filling a nanotube with water?? Markus Kaukonen
- AMBER: general question Gigil Toton
Wednesday, 13 August 2008
- AMBER: amber 9 on Intel Harpertown Geoff Wood
- AMBER: problem with prep file generation aneesh cna
- AMBER: modified parmtop file from ptraj? Hannes Wallnoefer
- AMBER: Querry dipti lele
- Re: AMBER: modified parmtop file from ptraj? Florian Haberl
- Re: AMBER: modified parmtop file from ptraj? Daniel Cappel
- RE: AMBER: amber 9 on Intel Harpertown Ross Walker
- RE: AMBER: Querry Ross Walker
- Re: AMBER: Querry Lachele Foley (Lists)
- Re: AMBER: frcmod:attn needs revision Junmei Wang
- Re: AMBER: help me for filling a nanotube with water?? Thomas Steinbrecher
- Re: AMBER: problem with prep file generation Junmei Wang
- Re: AMBER: frcmod:attn needs revision moitrayee.mbu.iisc.ernet.in
- Re: AMBER: modified parmtop file from ptraj? Thomas Cheatham
- Re: AMBER: frcmod:attn needs revision Junmei Wang
- AMBER: mm-pbsa / sander.MPI ? Arturas Ziemys
- AMBER: Compile AMBER 9 on TACC Ranger super computer jialei
- RE: AMBER: Compile AMBER 9 on TACC Ranger super computer Ross Walker
- AMBER: how to choose the appropriate ensemble for a given problem Ruchi Sachdeva
- AMBER: MD with NMR restraints Sally Pias
- Re: AMBER: frcmod:attn needs revision moitrayee.mbu.iisc.ernet.in
- AMBER: amber9 hangas after job submission Vijay Manickam Achari
Thursday, 14 August 2008
- Re: AMBER: mm-pbsa / sander.MPI ? Miguel Ortiz-Lombardía
- AMBER: minimization stops or does not write anything rebeca.mmb.pcb.ub.es
- Re: AMBER: amber9 hangas after job submission Carlos Simmerling
- AMBER: Glycoprotein once again.......... dipti lele
- AMBER: constph shubhra srivastava
- Re: AMBER: minimization stops or does not write anything Robert Duke
- Re: AMBER: amber9 hangas after job submission Robert Duke
- Re:AMBER: Compile AMBER 9 on TACC Ranger super computer 张勇
- Re: AMBER: Glycoprotein once again.......... Lachele Foley (Lists)
- Re: AMBER: mm-pbsa / sander.MPI ? Arturas Ziemys
- AMBER: interaction energies Arturas Ziemys
- RE: AMBER: Compile AMBER 9 on TACC Ranger super computer Ross Walker
- AMBER: Help compiling Nab programs for AMBER tools Ragnarok sdf
- Re: AMBER: Compile AMBER 9 on TACC Ranger super computer David LeBard
- Re: AMBER: Help compiling Nab programs for AMBER tools M. L. Dodson
- AMBER: generate topology file for alanine scanning (mmpbsa) luzhenw1.msu.edu
- AMBER: Proton Parameters Shultz, Jack
- RE: AMBER: Compile AMBER 9 on TACC Ranger super computer jialei
- RE: AMBER: Compile AMBER 9 on TACC Ranger super computer Ross Walker
- AMBER: impropers over bonds between sidechains Grange Hermitage
- Re: AMBER: impropers over bonds between sidechains M. L. Dodson
- Re: AMBER: impropers over bonds between sidechains Grange Hermitage
- Re: AMBER: Prepgen Grange Hermitage
Friday, 15 August 2008
- Re: AMBER: Prepgen Junmei Wang
- Re: AMBER: interaction energies Alessandro Nascimento
- RE: AMBER: Compile AMBER 9 on TACC Ranger super computer jialei
- RE: AMBER: Compile AMBER 9 on TACC Ranger super computer Ross Walker
Saturday, 16 August 2008
- Re: AMBER: questions about previous posts David A. Case
Sunday, 17 August 2008
- AMBER: solvatebox TIP4PEWBOX amb2gmx gives TIP3P in top TIP4PEW in gro Grange Hermitage
- AMBER: Negative dihedral coefficients in amber99 - Possible? Ilyas Yildirim
- Re: AMBER: Prepgen Grange Hermitage
- Re: AMBER: solvatebox TIP4PEWBOX amb2gmx gives TIP3P in top TIP4PEW in gro Grange Hermitage
- RE: AMBER: Negative dihedral coefficients in amber99 - Possible? Ross Walker
- AMBER: trying ff99SP Grange Hermitage
Monday, 18 August 2008
- Re: AMBER: solvatebox TIP4PEWBOX amb2gmx gives TIP3P in top TIP4PEW in gro Alan
- AMBER: unsubscribe khuram sb
- Re: AMBER: solvatebox TIP4PEWBOX amb2gmx gives TIP3P in top TIP4PEW in gro Grange Hermitage
- AMBER: RDF output file format aneesh cna
- Re: AMBER: RDF output file format Bertrand P. S. Russell
- Re: AMBER: solvatebox TIP4PEWBOX amb2gmx gives TIP3P in top TIP4PEW in gro Alan
- Re: AMBER: solvatebox TIP4PEWBOX amb2gmx gives TIP3P in top TIP4PEW in gro Grange Hermitage
- AMBER: Initial structure from NMR structures Siddharth Rastogi
Tuesday, 19 August 2008
- AMBER: How to convert a CHARMM trajectory to AMBER format? Jeffrey
- Re: AMBER: How to convert a CHARMM trajectory to AMBER format? Wei Huang
- RE: AMBER: Initial structure from NMR structures Ross Walker
- RE: AMBER: How to convert a CHARMM trajectory to AMBER format? Ross Walker
- AMBER: Compile Error Shultz, Jack
- AMBER: Amber compile Shultz, Jack
- RE: AMBER: Amber compile Shultz, Jack
- AMBER: IGB=10 in Amber10 In Hee Park
- AMBER: Problem loading the leaprc.amoeba force field file in Amber 10. Zhao, Zhen (zhaozh)
- AMBER: Problems with sleap and amoeba Neil J. Henson
- Re: AMBER: Problems with sleap and amoeba Bill Ross
- Re: AMBER: Problems with sleap and amoeba Neil J. Henson
- Re: RE: AMBER: How to convert a CHARMM trajectory to AMBER format? Jeffrey
Wednesday, 20 August 2008
- AMBER: Questions about Locally enhanced sampling (LES) and Replica exchange xiaonan zhang
- AMBER: Trouble installing Amber 9 Sampath Koppole
- AMBER: Force field equation Chih-Ying Lin
- AMBER: Silicon parameters Abdul Hameed, MohamedDiwanMo
- Re: AMBER: MD with NMR restraints David A. Case
- Re: AMBER: Proton Parameters David A. Case
- Re: AMBER: impropers over bonds between sidechains David A. Case
- Re: AMBER: Problem loading the leaprc.amoeba force field file in Amber 10. David A. Case
- AMBER: Using Na+ ions as input to leap? Pablo Englebienne
- AMBER: NMR average structure Gigil Toton
- Re: AMBER: Questions about Locally enhanced sampling (LES) and Replica exchange Carlos Simmerling
- Re: AMBER: NMR average structure Carlos Simmerling
- Re: AMBER: Force field equation Carlos Simmerling
- Re: AMBER: trying ff99SP David A. Case
- AMBER: MOIL-View: is there a command line version? Sasha Buzko
- Re: AMBER: MOIL-View: is there a command line version? Carlos Simmerling
- Re: AMBER: MOIL-View: is there a command line version? Sasha Buzko
- Re: AMBER: Using Na+ ions as input to leap? - solved Pablo Englebienne
- AMBER: MOIL-View is for SGI. How do we analyze LES trajectories? Sasha Buzko
- AMBER: Vlimit Exceeded and inhomogeneous system !!!!!! Piyush Wanjari
- Re: AMBER: Force field equation Chih-Ying Lin
- AMBER: pdb file ?? Chih-Ying Lin
Thursday, 21 August 2008
- Re: Re: RE: AMBER: How to convert a CHARMM trajectory to AMBER format? Jeffrey
- AMBER: new residues in AMOEBA Grange Hermitage
- Re: AMBER: Force field equation Carlos Simmerling
- AMBER: Fwd: Welcome to amber Maicon Sartin
- AMBER: SANDER Parallel Maicon Sartin
- AMBER: Gohlke in-house iRED Simulated Order Parameter Script Titus, Jamie (bairdje)
- AMBER: DFTB QMMM parameters ambiguity in AMBER10 docs M. L. Dodson
- AMBER: Error when compiling and testing AmberTools Ben Roberts
- AMBER: all & united atoms force field fatima.chami.durham.ac.uk
- Re: AMBER: all & united atoms force field cgji
- AMBER: Error runing Addles Shultz, Jack
Friday, 22 August 2008
- Re: AMBER: Error when compiling and testing AmberTools Andreas Svrcek-Seiler
- AMBER: united atom force field Adrien Delmont
- Re: AMBER: Error runing Addles Carlos Simmerling
- Re: AMBER: all & united atoms force field fatima.chami.durham.ac.uk
- Re: AMBER: united atom force field Ray Luo
- Re: AMBER: all & united atoms force field Ray Luo
- Re: AMBER: united atom force field Adrien Delmont
- Re: AMBER: Silicon parameters Junmei Wang
- Re: AMBER: all & united atoms force field fatima.chami.durham.ac.uk
- AMBER: vdw 6-9 potential fatima.chami.durham.ac.uk
- Re: AMBER: vdw 6-9 potential Carlos Simmerling
- RE: AMBER: all & united atoms force field Yong Duan
- AMBER: Dell 2 Quad Core System Performance Ilyas Yildirim
- Re: AMBER: Vlimit Exceeded and inhomogeneous system !!!!!! David A. Case
Saturday, 23 August 2008
- Re: AMBER: vdw 6-9 potential fatima.chami.durham.ac.uk
- Re: AMBER: vdw 6-9 potential Carlos Simmerling
- Re: AMBER: MOIL-View is for SGI. How do we analyze LES trajectories? Carlos Simmerling
- Re: AMBER: MOIL-View is for SGI. How do we analyze LES trajectories? Sasha Buzko
Monday, 25 August 2008
- AMBER: LES trajectories Urszula Uciechowska
- AMBER: pmemd iwrap trouble Lars Skjærven
- Re: AMBER: pmemd iwrap trouble Robert Duke
- AMBER: mol2, xleap, Segmentation fault Anna Karawajczyk
- Re: AMBER: pmemd iwrap trouble Lars Skjærven
- AMBER: Parameters for chloride ion in contact with a protein Francesco Pietra
- Re: AMBER: mol2, xleap, Segmentation fault Cenk \(Jenk\) Andac
- Re: AMBER: pmemd iwrap trouble Lars Skjærven
- AMBER: Problem with the prmtop file generated by sleap and leaprc.amoeba in Amber 10. Zhao, Zhen (zhaozh)
- Re: AMBER: pmemd iwrap trouble Robert Duke
- Re: AMBER: pmemd iwrap trouble Carlos Simmerling
- Re: AMBER: Vlimit Exceeded and inhomogeneous system !!!!!! Piyush Wanjari
- Re: AMBER: PDB files in Amber10 Scott Brozell
- Re: AMBER: Vlimit Exceeded and inhomogeneous system !!!!!! Piyush Wanjari
- Re: AMBER: pmemd iwrap trouble Lars Skjærven
- Re: AMBER: pmemd iwrap trouble Robert Duke
- Re: AMBER: pmemd iwrap trouble Robert Duke
- Re: AMBER: pmemd iwrap trouble Robert Duke
Tuesday, 26 August 2008
- AMBER: tan luo radii Jacopo Sgrignani
- AMBER: installation amber on suse11.0 selami ercan
- AMBER: Bennett acceptance ratio with Amber10 Samuel Genheden (a03samge)
- Re: AMBER: Bennett acceptance ratio with Amber10 steinbrt.scripps.edu
- AMBER: latest update on residuegen Junmei Wang
- Re: AMBER: Querry Carlos Simmerling
- Re: AMBER: pmemd iwrap trouble Carlos Simmerling
- Re: AMBER: installation amber on suse11.0 Cenk \(Jenk\) Andac
- RE: AMBER: installation amber on suse11.0 Ross Walker
- Re: AMBER: installation amber on suse11.0 Maicon Sartin
- Re: AMBER: vdw 6-9 potential fatima.chami.durham.ac.uk
- Re: AMBER: pmemd iwrap trouble Lars Skjærven
- Re: AMBER: pmemd iwrap trouble Thomas Cheatham III
- Re: AMBER: pmemd iwrap trouble Carlos Simmerling
- Re: AMBER: pmemd iwrap trouble Robert Duke
- AMBER: Querry dipti lele
- Re: AMBER: pmemd iwrap trouble Lars Skjærven
- RE: AMBER: tan luo radii Ray Luo
- AMBER: Source FIles of SANDER Maicon Sartin
- Re: AMBER: Source FIles of SANDER Carlos Simmerling
- Re: AMBER: Source FIles of SANDER Bill Ross
- Re: AMBER: pmemd iwrap trouble Robert Duke
- Re: AMBER: value of Pi in Amber Scott Brozell
- AMBER: molecular structure Chih-Ying Lin
- Re: AMBER: molecular structure Carlos Simmerling
- RE: AMBER: united atom force field Ray Luo
- Re: AMBER: Source FIles of SANDER Maicon Sartin
- Re: AMBER: Source FIles of SANDER Carlos Simmerling
- RE: AMBER: Source FIles of SANDER Ross Walker
- Re: AMBER: pmemd iwrap trouble Robert Duke
- AMBER: net charge Gigil Toton
- RE: AMBER: Bennett acceptance ratio with Amber10 Samuel Genheden (a03samge)
- AMBER: coordinate change of pdb structure using xleap Henrik Öberg
- AMBER: constant ph (cpinutil file) shubhra srivastava
Wednesday, 27 August 2008
- Re: AMBER: coordinate change of pdb structure using xleap saurabh agrawal
- Re: AMBER: Querry dipti lele
- AMBER: querry dipti lele
- Re: AMBER: Source FIles of SANDER Maicon Sartin
- Re: AMBER: Querry Carlos Simmerling
- Re: AMBER: pmemd iwrap trouble Carlos Simmerling
- Re: AMBER: Querry dipti lele
- AMBER: MM-PBSA multiple trajectory problem Carra, Claudio (JSC-SK)[USRA]
- RE: AMBER: Bennett acceptance ratio with Amber10 steinbrt.scripps.edu
- Re: AMBER: installation amber on suse11.0 selami ercan
- Re: AMBER: respgen -a charge groups function ineffective unless Junmei Wang
- AMBER: Re: Dell 2 Quad Core System Performance Ilyas Yildirim
- Re: AMBER: Re: Dell 2 Quad Core System Performance Carlos Simmerling
- RE: AMBER: Re: Dell 2 Quad Core System Performance Ross Walker
- AMBER: Is there a way to cluster frames of a trajectory? Sasha Buzko
- Re: AMBER: Is there a way to cluster frames of a trajectory? Adrian Roitberg
- Re: AMBER: Is there a way to cluster frames of a trajectory? Sasha Buzko
- Re: AMBER: Is there a way to cluster frames of a trajectory? Carlos Simmerling
- AMBER: solvent interaction in active site Hakkim Boy
Thursday, 28 August 2008
- AMBER: Membrane simulations priya priya
- AMBER: to understand how frcmod.ff99SB works Alan
- Re: AMBER: pmemd iwrap trouble Lars Skjærven
- AMBER: output file format in SANDER.MPI & PMEMD fatima.chami.durham.ac.uk
- Re: AMBER: output file format in SANDER.MPI & PMEMD Robert Duke
- Re: AMBER: output file format in SANDER.MPI & PMEMD fatima.chami.durham.ac.uk
- Re: AMBER: to understand how frcmod.ff99SB works Melinda Layten
- AMBER: Critical patch for pmemd 10 extra points code Robert Duke
- AMBER: RE: Personal favor Ross Walker
- RE: AMBER: to understand how frcmod.ff99SB works Ross Walker
- RE: AMBER: output file format in SANDER.MPI & PMEMD Ross Walker
- Re: AMBER: to understand how frcmod.ff99SB works Alan
- AMBER: conversion from crd to netcdf returns almost identical file! Jose Borreguero
- Re: AMBER: pmemd iwrap trouble Thomas Cheatham III
- Re: AMBER: pmemd iwrap trouble Robert Duke
- AMBER: xleap fails to savemol2 taufik.alsarraj.utoronto.ca
- RE: AMBER: to understand how frcmod.ff99SB works Ilyas Yildirim
- Re: AMBER: xleap fails to savemol2 FyD
- AMBER: Problem in calculation of resp charges using RED III moitrayee.mbu.iisc.ernet.in
Friday, 29 August 2008
- Re: AMBER: Problem in calculation of resp charges using RED III FyD
- Re: AMBER: to understand how frcmod.ff99SB works Alan
- Re: AMBER: Problem in calculation of resp charges using RED III moitrayee.mbu.iisc.ernet.in
- Re: AMBER: Problem in calculation of resp charges using RED III FyD
- RE: AMBER: to understand how frcmod.ff99SB works Ross Walker
- Re: AMBER: xleap fails to savemol2 taufik.alsarraj.utoronto.ca
- AMBER: Solvent Accesible Surface Area (SASA) - Confused Deepangi Pandit
- Re: AMBER: xleap fails to savemol2 FyD
- AMBER: join two units in amber9 or amber10 taufik.alsarraj.utoronto.ca
- Re: AMBER: xleap fails to savemol2 taufik.alsarraj.utoronto.ca
- AMBER: wrapping w/ ptraj Arturas Ziemys
- Re: AMBER: xleap fails to savemol2 FyD
Saturday, 30 August 2008
- AMBER: compilation problem john smith
- AMBER: vlimit exceeded Wang,Ying
- RE: AMBER: compilation problem Ross Walker
- RE: AMBER: vlimit exceeded Ross Walker
- RE: AMBER: vlimit exceeded Wang,Ying
- AMBER: RESP charges fitting for polarizable force fields Grange Hermitage
Sunday, 31 August 2008
- Re: AMBER: Critical patch for pmemd 10 extra points code Carlos Simmerling
- Re: AMBER: Critical patch for pmemd 10 extra points code Robert Duke
- AMBER: AMBER under cygwin on 64 bit Vista Charles Letner, Ph.D.

Last message date: Wed Sep 03 2008 - 06:07:13 PDT
Archived on: Fri Nov 22 2024 - 05:53:41 PST

Amber Archive Aug 2008 by date