I get these error message running addles. Is my molecule too big? I have 1973 atoms.
file rprm name=(str1.prmtop) read
file rcrd name=(str1.inpcrd) pack=2 read
file wprm name=(neb.prmtop) wovr
file wcrd name=(neb.inpcrd) wovr
action
~ use original mass
omas
pimd
~ make 1 copies of atom 1 to 1973 (the whole system)
space numc=1 pick #prt 1 1973 done
*EOD
$ $AMBERHOME/exe/addles <addles.in >addles.out
21 [main] addles 3656 _cygtls::handle_exceptions: Error while dumping state
(probably corrupted stack)
Segmentation fault (core dumped)
space numc=2 pick #prt 1 1973 done
$ $AMBERHOME/exe/addles <addles.in >addles.out
630 [main] addles 2676 _cygtls::handle_exceptions: Error while dumping state
(probably corrupted stack)
Segmentation fault (core dumped)
~ make 2 copies of atom 1 to 3 (the whole system)
space numc=2 pick #prt 1 3 done
$ $AMBERHOME/exe/addles <addles.in >addles.out
22 [main] addles 3864 _cygtls::handle_exceptions: Error while dumping state
(probably corrupted stack)
Segmentation fault (core dumped)
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
to majordomo.scripps.edu
Received on Sun Aug 24 2008 - 06:07:49 PDT
