AMBER: MM-PBSA Issue in Amber 10

From: Peterson, Matthew W. <mpeterson.mitre.org>
Date: Tue, 12 Aug 2008 13:44:29 -0400

Hello,

 

We recently upgraded from Amber 9 to Amber 10, and we've been running
into problems running mm_pbsa.pl.

 

The error I'm getting is

 

=>> Calc delta from raw data

         No data for 0+0 MM BOND 0

 

The snapshots seem to get created correctly (I used ambpdb to check
against our .prmtop files), and the BOND term is there for the first
snapshot.

 

Has anyone run into this problem previously?

 

Thanks,

 

Matt

 

 

Matthew Peterson

The MITRE Corporation

mpeterson.mitre.org

 


-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
      to majordomo.scripps.edu
Received on Wed Aug 13 2008 - 06:07:45 PDT
Custom Search