Hi,
You can actually use GLYCAM 06 for all parts of an LPS even in a lipid
bilayer.
Tessier, M.B., et al. Extension of the GLYCAM06 Biomolecular Force Field to
Lipids, Lipid Bilayers and Glycolipids. Molecular Simulation, 2008. 34(4):
p. 349-364.
I'd suggest downloading the latest version of Glycam 06 (e) from the website
<
http://www.glycam.com> www.glycam.com to make sure that all parameters are
up to date.
Matthew Tessier
<mailto:mbt3911.uga.edu> mbt3911.uga.edu
<mailto:matthew.tessier.gmail.com> matthew.tessier.gmail.com
Woods' Lab Room 1092
Complex Carbohydrate Research Center - University of Georgia
From: owner-amber.scripps.edu [mailto:owner-amber.scripps.edu] On Behalf Of
Wenyong Tong
Sent: Tuesday, August 05, 2008 10:52 AM
To: amber.scripps.edu
Subject: Re: AMBER: Need help with force field parameters for
Lipopolysaccharide (LPS)
Hello,
For sugar part, you can use glycam04 or 06. For lipid tail,you can use
gaff.
Wenyong
----- Original Message ----
From: dipti lele <diptisl86.gmail.com>
To: amber.scripps.edu
Sent: Tuesday, August 5, 2008 6:03:10 AM
Subject: AMBER: Need help with force field parameters for Lipopolysaccharide
(LPS)
Hi everyone!
I'm trying to run a few simulations with LPS but am unable to find a force
field for the molecule. Can anybody please help me with this ?
--
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Received on Wed Aug 06 2008 - 06:07:39 PDT
