Dear Amber's users,
I am looking at the aggregation of solute molecules in explicit water. From VMD
i can see formation of clusters. I am desperate for a way to detect clustering
on a long MD trajectories.
I have downloaded th MMSTB tool set but this does only clustering analysis on
conformations and what I am looking is nucleation rate or in an other word
formation of clusters.
If any one has come across this matter..I will be glad to know
I am not sure if the VMD package can extract such information from an MD
trajectories
best wishes
Fatima
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
to majordomo.scripps.edu
Received on Sun Aug 10 2008 - 06:07:27 PDT
