AMBER: constph

From: shubhra srivastava <shubhra_mbi.yahoo.co.in>
Date: Thu, 14 Aug 2008 17:24:57 +0530 (IST)

Hi!
I just installed amber 9.
I would like to use this new amber version to do constant pH simulation. I have succesfully generate parm and crd files following the instruction in the manual. But when I tried to run cpinutil.pl by the following command:

ambpdb -p prmtop < prmcrd | cpinutil.pl > cpin

I got the following error:

| New format PARM file being parsed.
| Version = 1.000 Date = 08/12/08 Time = 12:27:23
Can't locate CPin.pm in .INC (@INC contains: /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.7/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/site_perl/5.8.5/x86_64-linux-thread-multi /usr/lib/perl5/site_perl/5.8.8 /usr/lib/perl5/site_perl/5.8.7 /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5 /usr/lib/perl5/site_perl /usr/lib64/perl5/vendor_perl/5.8.8/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.7/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.6/x86_64-linux-thread-multi /usr/lib64/perl5/vendor_perl/5.8.5/x86_64-linux-thread-multi /usr/lib/perl5/vendor_perl/5.8.8 /usr/lib/perl5/vendor_perl/5.8.7 /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5 /usr/lib/perl5/vendor_perl /usr/lib64/perl5/5.8.8/x86_64-linux-thread-multi /usr/lib/perl5/5.8.8 . /usr/local/amber9/exe) at /usr/local/amber9/exe/cpinutil.pl
 line 9.
BEGIN failed--compilation aborted at /usr/local/amber9/exe/cpinutil.pl line 9.




      Unlimited freedom, unlimited storage. Get it now, on http://help.yahoo.com/l/in/yahoo/mail/yahoomail/tools/tools-08.html/
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
      to majordomo.scripps.edu
Received on Sun Aug 17 2008 - 06:07:24 PDT
Custom Search